Effector profile
PlantPEAD ID: PlantPEAD02031 | Uniprot ID: A0A399NQE3 | Source: Orthologous |
Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 28447 | Pathogen type: Bacteria |
Species: Clavibacter michiganensis | Strain: CFBP 7493 | Other name: |
Gene name: | NCBI Gene ID: QWEC01000195 | |
Entry name: A0A399NQE3_9MICO | Protein name: Type I polyketide synthase | |
DOI: |
Gene/Protein information
Gene sequence:
TGGCGGCGGCCGGCAGGAGCGCGTCGCGCTCGGCCTCCGTGATGGCGACCACGGCGATGCGGGGCGCGTCCGCGGAGATGGCGGTGCCGGACGGCGTGGGCGCCGCTCCCGCATCCAGCGCGGCGGCGAGCTCCTCGGCGGTCGGCGCGGTCCAGAGCCACACGGTCGGGCGGTCGAGCGCGTTGCCGAGCTCCCGCGACCTCGGGTGCTCCTCGAGCACGATGTGGAAGTTCGTGCCCCCGAAGCCGAAGGCGGACAGGCCCGCGCGGCGCACGGGCCGCTCGGGCGTCCGGAACCACGGCCGCGTCCGCGTGGCCACGTGCAGCGGGCTGCCCGTGAACGAGTCCGCGGGCTTCTCGACCTTGATGGTGGGCGGCAGGATCCGGTGCTGCAGCGCGAGCGAGAGCTTGATGAGGCCGGCGGCGCCCGCCGCGGCCTTGGTGTGCCCGATCTGCGACTTCACGGATCCGATGCCGATGGACGACTCCGACGCCCCGCTGTCGGCCAGCACCTCGGCCAGCGCGCTGAGCTCGGTGGCGTCGCCGACCGCGGTGCCCGTGCCGTGCGCCTCGATGATCGACACCGACGCGGGGGAGCAGTCGGCGTCCTCGTACGCCCGGCGGAGCGCGAGCTGCTGCCCGCTCGCCCGCGGCGCGTAGATGGACTTGTAGCGGCCGTCGCTCGCGGAGCCGATGCCGCGGATCACCGAGTAGATCCGGTTGCCGTCGCGCTCGGCGTCGTCGAGGCGGCGCAGCGCGAGCATGCCGATGCCCTCGCCGATCAGGGTGCCGTCGCTGGAGGCGTCGAACGGCCGCACGTCGCCCGTGGGGCTGAACGCGGGCGTCTTCGAGAAGCACAGGTACATGAAGATCGTGTTCTCGGCGTCGCAGCCGCCCGTGATCATCGTGTCGGCGCGGTGGTCCACGAGCTCGGCCGCGGCGGCGCGGAGGGCGCCGAGCGAGCTGGCGCAGGCCGCGTCCACCGTCATGTTCATGCCGCCGAGGTCGAAGCGGTTGGCCACGCGGCCGGCCACCACGTTGCCGAGCATCCCGGGGAACGAGTTCTCCTCCCAGGGGGCGAACCCGGCGCTGAAGCGGCGGGCGAGCTCGTCGGCGTCGGCCTCGCTCAGCCCGATCGAGCGCGCCGCCCGGCGCACGGCGGGGGTCTGCAGGCGGGCCGAGAGCGGCTGCGTCAGCTGGTTGGCGCCCGTGACGCCGAGCACGATGCCCGTGCGCTCGCGGTCGTACCAGCCGCTGCCCTCGGCGCGCGCGTCCTCCAGCACGTCGCGGGTGACGACGAGGCTGAGCAGCTGCAGCACGTCGGTGACGTCGAGCTGTGCCGGCGGGATCCCGAACTCGATCGGGTGGAACGGCACCGGGTCGATGAAGCCGCCGCGCTTGGCGTACGTCTTGTCCGGCGCCGACCGGTCCGCCGAATAGTGGTCGTCGACGTCCCAGTGCCATTCCGGGATGTCCCGGATGGAATCCACGCGATCGACGATGCCGTTCCAGAAGCCCTCCACATCGGAGGATCCCGGGAACAGGCTCGAAATGCCCACCACGGCGAGCGGGGTGCGCGCCAGGCGACGGTCGAGTTCCGCGTCGTCGGTATTCTCGTTCAT
Protein sequence:
MNENTDDAELDRRLARTPLAVVGISSLFPGSSDVEGFWNGIVDRVDSIRDIPEWHWDVDDHYSADRSAPDKTYAKRGGFIDPVPFHPIEFGIPPAQLDVTDVLQLLSLVVTRDVLEDARAEGSGWYDRERTGIVLGVTGANQLTQPLSARLQTPAVRRAARSIGLSEADADELARRFSAGFAPWEENSFPGMLGNVVAGRVANRFDLGGMNMTVDAACASSLGALRAAAAELVDHRADTMITGGCDAENTIFMYLCFSKTPAFSPTGDVRPFDASSDGTLIGEGIGMLALRRLDDAERDGNRIYSVIRGIGSASDGRYKSIYAPRASGQQLALRRAYEDADCSPASVSIIEAHGTGTAVGDATELSALAEVLADSGASESSIGIGSVKSQIGHTKAAAGAAGLIKLSLALQHRILPPTIKVEKPADSFTGSPLHVATRTRPWFRTPERPVRRAGLSAFGFGGTNFHIVLEEHPRSRELGNALDRPTVWLWTAPTAEELAAALDAGAAPTPSGTAISADAPRIAVVAITEAERDALLPAAA
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
57247.2 | 540 | 5.04 | -0.128 | 39.12 |
Plant infestation information
Experimental plant: | |
Susceptible plant: | Disease name: |
Host classification: | NCBI Species: |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro: IPR018201,IPR014031,IPR014030,IPR032821,IPR020841,IPR016039
Pfam: PF16197,PF00109,PF02801
SMART: SM00825
KEGG:
PRINTS: