Effector profile
| PlantPEAD ID: PlantPEAD05368 | Uniprot ID: B0RCY4 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 28447 | Pathogen type: Bacteria |
| Species: Clavibacter michiganensis | Strain: subsp. sepedonicus strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1 | Other name: |
| Gene name: | NCBI Gene ID: AM849034 | |
| Entry name: B0RCY4_CLAMS | Protein name: UPF0234 protein CMS3006 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGGTCCGCATGGCAGATTCCTCGTTCGACGTCGTCAGCAAGGTCGACCGCATGGAGGCGGACAACGCCGTCCACCAGACCCAGAAGGAGGTGGAGCAGCGCTACGACTTCAAGAACGTGGGCGCCTCCATCGAGTGGAGCGGCGACACCATCCTCATGAAGGCCTCCAGCGAGGAGCGCGTGAAGGCGATCCTCGACGTGCTGCAGACGAAGATGTTCAAGCGCGGCATCGGCCTCAAGAGCCTCGAGGAGGGCGAGCCCTTCGCCTCGGGCAAGGAGTACCGCATCGAGGTCACCCTCAAGCAGGGCATCGACCAGGCCAACGCGAAGAAGCTCGGCAAGATCATCCGCGACGAGGGCCCCAAGAGCATCAAGAGCCGCGTCGAGGGCGACGAGCTCCGCGTCTCCAGCAAGAGCCGGGACGACCTGCAGCAGACCATCGCGCTGCTCAAGGGCGCCGACGTCGACCTCGACCTGCAGTTCGTCAACTTCCGCTGA
Protein sequence:
MVRMADSSFDVVSKVDRMEADNAVHQTQKEVEQRYDFKNVGASIEWSGDTILMKASSEERVKAILDVLQTKMFKRGIGLKSLEEGEPFASGKEYRIEVTLKQGIDQANAKKLGKIIRDEGPKSIKSRVEGDELRVSSKSRDDLQQTIALLKGADVDLDLQFVNFR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18566.1 | 165 | 5.98 | -0.561 | 29.2 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR007551,IPR035571,IPR035570,IPR036183
Pfam: PF04461
SMART:
KEGG: cms:CMS3006
PRINTS: