Effector profile
| PlantPEAD ID: PlantPEAD06398 | Uniprot ID: A0A251XM25 | Source: Orthologous |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 28447 | Pathogen type: Bacteria |
| Species: Clavibacter michiganensis | Strain: subsp. michiganensis | Other name: |
| Gene name: PelA_1 | NCBI Gene ID: MDHH01000001 | |
| Entry name: A0A251XM25_CLAMM | Protein name: Pectate lyase | |
| DOI: | ||
Gene/Protein information
Gene sequence:
GTGAAGAACGTGGTCATCGGCTCGCTCGCTGCCGACGGCATCCACTGCGAAGCCTCCTGCACCATCATCAACATGTGGTCCAGCCACGTCGGCGAGGATGCCGTGACCCTGCTCGACGGATCCCCGGCGTCCTCCGTCGTCACCATCCAGGGCGGAGGCGTTCAGCACGCGTACGACAAGGTCGTGCAGATGGATGGGGCCGGCACTGTCCGGATCATGCACTTCGCCGCGTCCGACATTGGCTCCCTCGTGCGTTCCTGCGGTAACTGCCCGCATCAGTACCCGCGGCACATGGTGGTCAGCGACGTCTTCATCGACGGTGGCCGTTACAAGGTCGCCGGCGTCAACCAGAACTTCGGCGACACCGCCAAGCTCGACCACATCACCATCCGCGGAACGCGCATGCAAGTCTGCGACAGGACCATCGGTGGCCGCGGCACTCCTGCGAAGGAGGTACCCGGCGGGAGCGGAGACCCCTACCCGGGCGTATGCGACTTCAGCTACGCCACCATCCTCTTCGAACACGGATGA
Protein sequence:
MKNVVIGSLAADGIHCEASCTIINMWSSHVGEDAVTLLDGSPASSVVTIQGGGVQHAYDKVVQMDGAGTVRIMHFAASDIGSLVRSCGNCPHQYPRHMVVSDVFIDGGRYKVAGVNQNFGDTAKLDHITIRGTRMQVCDRTIGGRGTPAKEVPGGSGDPYPGVCDFSYATILFEHG
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18537.9 | 176 | 6.01 | -0.024 | 31.53 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR004898,IPR012334,IPR011050
Pfam: PF03211
SMART:
KEGG:
PRINTS: