Effector profile
| PlantPEAD ID: PlantPEAD17080 | Uniprot ID: C6DGD6 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 554 | Pathogen type: Bacteria |
| Species: Pectobacterium carotovorum | Strain: subsp. carotovorum strain PC1 | Other name: Erwinia carotovora subsp. carotovora |
| Gene name: | NCBI Gene ID: CP001657 | |
| Entry name: C6DGD6_PECCP | Protein name: Type IV pilus secretin PilQ | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCACGATGAGGCGGGTATCAGCGTCGGCGTAATGAAAATGACCAATTCTCGTCGCGTGTGCTGTTGAGTATGGTTTCTGAACAGGTGACCAAATACGGGAACCTCACCCAATATGGGTACCTGTCTGTCGCTGCTCTTTTTCTGCTGCTGGAAAATACCGCCTAATACGATAGTTTCTCCATCGGCGACCGTCACCTGAGTTTGGATCTCCTGTTTATCGATCGCTAAGGCTTCGCCATTATCGCCCTGCTTAATCGTCTGCCCCGGCATGTTTTGACTGATTTTCAGATTCAGCGTAATCCGTCCGGCACGCAAAATATCCGGCGTGACCTCCATTCCGAGCACCGCTTCTTTAAATTCAATAGACGTCGATCCGCTGGCACCGCTGGAGACCTGATACGGAATTTCCGTACCTTGTTTAATACTGGCGGTCTGCTGGTGTGCGGTAAACAGCCGGGGGCTGGCAATAATTTCGACCTGACTTTCCTGCTCCAACGCCATGAGTTCCAGATCCAGCAGGCGACCATTCAATCGTGCTAAATGGAATCCCGCATTGATTGCTGGCGTATCCACTGGCAGGCCGACATTAAAATTATTCAGCCTGAGTGCATTATTCGCCGCACTCCCTTCACCCAGCCCCCAGTTAACGCCCAGTTCCTGAAGGTGTTCACTGCTGATGGTGACAATATGCGCGGCCAGTTGCACCTGCGCTAAAGGGAGATCGAGCTCCTTCACCCACGGTTCGAGCTGTGCCAAAGCGTCTTCCGTATCGCGAATCAATAACGTATTCGTTCGTTTATCCACCGTTACGCTGCCGCGTGCAGAGAGCAATGTTCCACGCTGAGCCTGAACGCTGGCTGCCACGTCTGCCGCATCGGCATACTGCAATGCGACTGAGATATTGTGCAGCGGTAATTTCTGCTCCTGTTCCGCCATACGCTCGTCCCGTTCCTTCTGTAAGGATTCAAGGTGCCCGGCAGGGAAAACCAACAGCACGTTACCGTTGCGTTCTGCACTGAGCTTACCCATGCGCAGAACAATATCCAGCGCCTGCTGCCACGGTACTTCAGCCAACCTTACGCTCAGGTTCCCCGTCACGCCCGGCGCGATCACAACATTTAGCTGCTGGTGCTCGGCTAACGCCTGGAGTACCCGCGGTATCGGCGAATCCTCAAACGCCATTGATACCGAATTTTCCGCACGAGCCTGAAACGACGCGGCAAGAAAAAGCAGCCCGCCCCATACCAGCACCTGACATAACATATTAATATTCAT
Protein sequence:
MNINMLCQVLVWGGLLFLAASFQARAENSVSMAFEDSPIPRVLQALAEHQQLNVVIAPGVTGNLSVRLAEVPWQQALDIVLRMGKLSAERNGNVLLVFPAGHLESLQKERDERMAEQEQKLPLHNISVALQYADAADVAASVQAQRGTLLSARGSVTVDKRTNTLLIRDTEDALAQLEPWVKELDLPLAQVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLIPASS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 46121.7 | 424 | 5.36 | -0.039 | 34.56 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR001775,IPR005644,IPR038591,IPR013355,IPR011662,IPR004846,IPR004845
Pfam: PF00263,PF03958
SMART: SM00965
KEGG: pct:PC1_3884
PRINTS: PR00811,PR01032