Effector profile
| PlantPEAD ID: PlantPEAD17773 | Uniprot ID: A0A0Q6QLL2 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 286 | Pathogen type: Bacteria |
| Species: Pseudomonas | Strain: sp. Root329 | Other name: |
| Gene name: | NCBI Gene ID: LMCV01000012 | |
| Entry name: A0A0Q6QLL2_9PSED | Protein name: Lytic transglycosylase | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TTAGCGTGGGGAAGCCACCGTCAGCATCTGGCCAGGCTTCAGCGCCTGGCCAACACGCGGATTCCAGCGCTTGAGGTGCTGCATTTCAACGTTGAAACGCTTGGCGACCATGTACAGCGAGTCGCCTTGCTGGACCTTGTACTGGGTCTGCGGCTTCTGTTGGTCAGCTTTACTGTTTGCTTTGCTGTTCGCCGCCACGACGGTGTTGACCCGACCGCTGCTGCGCTTCGTGGTGTCCTGCATGACCAGCGCCTGACCGGCCTTGAGATTCTTGCCGGTCAGCTTGTTCCAGCGTTGCAGGTCCTTGACGTCGACCTTGTTGGCCTTGGCGATGGCGGCCAGGTTGTCCCCGCGTTTAACGCGGTAAACGCGTTTGAGGCTGGCGAGTTCGGAGTCGTCCGAGCCTTCGAATACCGGCTTGAGCGGCTTCTTGCTGATCAACTCTTCAGGACGCATGGTCGACAGGCTGGCGGTCAGCAGTTGCGCCTTGGACGTTGGCACCAGCAAATGCTGGGGGCCATCGATGGTGGTGCGCTGCTTGAAGGCCGGGTTGAGCTGGAACAGTTCGTCTTCGTCGATGTTAGCCACCGCGGCGACCTTGGACAGGTCCATGCGCTGGTTGATTTCGACGACCTGGAAGTACGGTTCGTTGGCGATCGGGTTCAGGTTCACGCCGTAGGCTTCAGGTGCCAGCACCACTTGTGACAGGGCCAGCAGCTTTGGCACGTAGGCCTGGGTTTCGGCCGGCAGCGGCAGGTTCCAGTAATCGGTCGGCAAACCGAGCTTTTCGTTGCGCTCGATGGCCCGGCTGACCGTGCCTTCGCCGGCGTTATAGGCCGCCAGGGCCAGCAGCCAGTCGCCGTTGAACATGTCGTGCAGGCGGGTCAGGTAATCCATGGCCGCAGTGGTCGAGGCGGTGATATCGCGACGGCCATCATAGAAACGGGTTTGACGCAGGTTGAAGTAACGCCCGGTGGAAGGGATGAATTGCCACAAGCCAACCGCGTCGGCCCGGGAATAGGCCATCGGGTTGTAGGCGCTTTCAATCACTGGCAGCAGTGCCAGTTCCAGCGGCATGTTGCGTTCTTCAAGGCGTTCGACGATGTAGTGAATGTACAGGCTGCCGCGTTCGCCGGCGTTTTCGAGGAAGGACGGGTTGCTGGCGAACCACAGGCGCTGTTGCTCGATGCGCGGGTTGACGCCCAGGTTGTCCTGCAACTGGAAGCCTTGGCGCATGCGCTCCCAGACGTCTTGTGGAATTTGTGGAGTCGGTTTTTCGCTGAGCCAGATAGGTTTCTGCTTGGCCCGGGCGGCGATGTTCGGAGTGTGTGCCGCGTCGGTCTGCGGCACATGGCTTGAGCAGCCCGCCAGAGTGGCGGACACAGCCACCGCAATGGCTTGAGCCAAGCGGGTCAATGCGTCTGAATTGATGGCTTTACGAATAGATGACGACAT
Protein sequence:
MSSSIRKAINSDALTRLAQAIAVAVSATLAGCSSHVPQTDAAHTPNIAARAKQKPIWLSEKPTPQIPQDVWERMRQGFQLQDNLGVNPRIEQQRLWFASNPSFLENAGERGSLYIHYIVERLEERNMPLELALLPVIESAYNPMAYSRADAVGLWQFIPSTGRYFNLRQTRFYDGRRDITASTTAAMDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPAETQAYVPKLLALSQVVLAPEAYGVNLNPIANEPYFQVVEINQRMDLSKVAAVANIDEDELFQLNPAFKQRTTIDGPQHLLVPTSKAQLLTASLSTMRPEELISKKPLKPVFEGSDDSELASLKRVYRVKRGDNLAAIAKANKVDVKDLQRWNKLTGKNLKAGQALVMQDTTKRSSGRVNTVVAANSKANSKADQQKPQTQYKVQQGDSLYMVAKRFNVEMQHLKRWNPRVGQALKPGQMLTVASPR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 54079.8 | 484 | 9.54 | -0.416 | 43.76 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR018392,IPR036779,IPR023346,IPR010511,IPR000189,IPR008258
Pfam: PF01476,PF06474,PF01464
SMART: SM00257
KEGG:
PRINTS: