Effector profile
PlantPEAD ID: PlantPEAD17787 Uniprot ID: A0A178LB00 Source: Orthologous
Localization: Cytoplasmic(Pre) Pathogen taxonomy ID: 47885 Pathogen type: Bacteria
Species: Pseudomonas oryzihabitans Strain: H72 Other name:
Gene name: NCBI Gene ID: LWCR01000034
Entry name: A0A178LB00_9PSED Protein name: Lytic transglycosylase
DOI:
Gene/Protein information
Gene sequence:
TCAGTTGAGGAACAGCGTCAGGGTCTGGCCGGGGGTCAGGGCGGAGGCCACGCGTGGATTCCAGTCCTGCAGCGCCTGCACGCCGATGTTGTAGCGCTTGGCGATCTGGTAGAGCGAATCGCCCGCCTTGACCCGGTAGTAGGTGGGCGCGGCCTTGGCGTTCTTGGTCGTCTTGACAGCTGCCTGGGTGGCCTTGACGGTATAGGATGCCGGCATCGCCACGGCCGTGGCGGTGCCGCTGCTGGTACCGTGCAGCTTCAGGGTCTCACCGACCTTGAGGCCGCGTTTGCCGAGATCGTTCCAGCGCTTGAGATCGCCCAGCTCCACCTCGTTGGCCCGGGCGATGGACCAGAGGCTGTCGCCGGTGCGCACCTTGTAGGTCCGTACCACGGGCTCTTCGGCCACGGCGATGGTTTCCAGGGGCGTGGTGGTCTTGCCGGTCTCGCGCCGTGGGATCAGCAATTCCCGGCCAGCGGCCAGGCGGCTGCTGCCACTGAGCTTGTTGAGGGCGACGAGTTGCTCGACGCTCACGCGATTGCGCTTGGCGACGCTGCGCAGGGTATCGCCGCGGCGAACCCGGTATTCCTGCCACTGCACCACGGCCTCGGGGGCGATGTCGGGCAGGGTCGCGACCAGGCGCTGGGCCTTTTCCGCCGGCACCAGCAGGTGCTTGGGGCCGTCCATGGTCACGCGCTGGGTGTAGGCGGGATTCAGGCGATAGAGTTCGTTGGCGTCCAGATCCGCCAGTTCCGCGACCCGGGCCAGGTCCAGGTGCTGCTTGATGTCCACCACTTCGAAGTAGGGCTCGTTCGGGATGGACTCCAGGGCCAGGCCGTAGGCGTCCGGATTGCGCACGATCTGGGAAACGGCGAGCAGCTTGGGTACGTAGTCCTGGGTCTCCGGCGGCAGGGAGGACAGGTTCCAGTAGTCGGTCGGCAGACCCAGTGACTGGTTGCGTTCGATGGCACGACCGACCGTGCCTTCGCCGGCATTGTAGGCAGCCAGGGCCAGTAGCCAGTCGCCGCCGAACATGTCATGCAGCTTGCTCAGGTAGTCCAGGGCGGCATTGGTCGAGGCGGTGATGTCGCGGCGACCGTCATAGAAGCGGGTCTGGCGCAGATTGAAATACTTGCCGGTGGTGGGAATGAACTGCCACAGACCGGAGGCCGCACTGCGCGAAAGGGCATTAGGATTGAAGGAGCTTTCCACTACCGGTAGCAGAGCCAGTTCCAGCGGCATGTTGCGCTCTTCGAGGCGCTCGACGATGTAGTGCAGGTAGGGCGCGCCGCGGCTGCAGGATTGGGCGAGGGCGGCTTCATGGCTCGCATACCAGAGGCGCTGGCGATCGATGCGCGGATTGGTACCGTTGTCGCCTGCACCCTGGAGCTGATAGCCGTCCCGCACCCGGTCCCAGATGTCGCCGCTGGTCGCCGCTGCGGTCGGCGCCTTGCGCAGCCATTCCGGGGGACGCTGCATCTTGCTTTGCGTCATGTGCAGATCGGCCTGATAGGCGCGATTCTCCGGCTGCGAGTTGCTTTGACAGCCGGCGAGAAAGACCGCGAGGCAAAGCGCCGAGACTTTGAAGGAGGTGGCCAGAACGTCTAATTCGCGGGTCTTCGGCGTCGCTGGCGGCAT
Protein sequence:
MPPATPKTRELDVLATSFKVSALCLAVFLAGCQSNSQPENRAYQADLHMTQSKMQRPPEWLRKAPTAAATSGDIWDRVRDGYQLQGAGDNGTNPRIDRQRLWYASHEAALAQSCSRGAPYLHYIVERLEERNMPLELALLPVVESSFNPNALSRSAASGLWQFIPTTGKYFNLRQTRFYDGRRDITASTNAALDYLSKLHDMFGGDWLLALAAYNAGEGTVGRAIERNQSLGLPTDYWNLSSLPPETQDYVPKLLAVSQIVRNPDAYGLALESIPNEPYFEVVDIKQHLDLARVAELADLDANELYRLNPAYTQRVTMDGPKHLLVPAEKAQRLVATLPDIAPEAVVQWQEYRVRRGDTLRSVAKRNRVSVEQLVALNKLSGSSRLAAGRELLIPRRETGKTTTPLETIAVAEEPVVRTYKVRTGDSLWSIARANEVELGDLKRWNDLGKRGLKVGETLKLHGTSSGTATAVAMPASYTVKATQAAVKTTKNAKAAPTYYRVKAGDSLYQIAKRYNIGVQALQDWNPRVASALTPGQTLTLFLN
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
60189.4 544 9.25 -0.372 41.43
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.