Effector profile
| PlantPEAD ID: PlantPEAD17853 | Uniprot ID: A0A1T2YAA6 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 294 | Pathogen type: Bacteria |
| Species: Pseudomonas fluorescens | Strain: P5A | Other name: |
| Gene name: | NCBI Gene ID: MSDF01000036 | |
| Entry name: A0A1T2YAA6_PSEFL | Protein name: Lytic transglycosylase | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCAGCGCGGCCCGGAAACCACCAGCATCTGCCCCGGCTTCAGTGCCTGGCCAGTACGCGGATTCCAGCGCTTGAGATGTTGCATCTCAACGTTGAAACGCTTGGCAACAATGTACAGCGAGTCACCCTTCTTGACCTTGTATTGCACGGGCTTCTTGCTGTCAGCCTTGGCCACCAGCTTGCGCGTGTCCTGCATCACCAGGGTCTGACCGACCTTGAGTGCCTGGCCGTTGAGCTTGTTCCAGCGCTGCAGGTCATGCACGTCGACCTTGTTGGCTTTGGCGATCAGCGTGAGGTTGTCGCCGTTACGCACCTTGTAATTGCGGGTACGCCCAGCAACCCGCGTGGTCTCAACTTCGTCGAACACCTGCTTTTTCGGACGCATCGCCAGCAATTCTTCCGGCTTCATCGTCGAAAGGGTGCTGGTCAGCAGTTGCGCCTTGGAGCTGGGCACGAGCAAATGTTGCGGGCCGTCGAGGGTGGTGCGTTGCTTCAGGGCCGGGTTGAGCTGGAACAGTTCGTCTTCGTCGATTTCCGCCAGCGCCGCTACCCGTGACAGGTCCATGCTTTGCTTGACTTCAACCACTTCGAAATACGGCGTGTTGGCAATCGGGCTCAGGTTGACGCCGTAGGCCTCGGGGGCCAGCACCACCTGGGACAGCGCCAGGAATTTGGGCACGTAGTCCTTGGTTTCCTGGGGCAGGGGCAGGTTCCAGTAGTCGGTAGGCAGGCCGAGCTTTTCGTTGCGCTCGATGGCCCGGCTTACCGTGCCTTCGCCAGCGTTATAGGCCGCAAGCGCCAGTAACCAGTCGCCGTTGAACATGTCATGCAGACGCGTCAGATAGTCCAGGGCGGCGGTGGTGGAGGCGGTGATATCGCGGCGGCCGTCGTAGGCGCGGGTCTGGCGCAGGTTGAAGTAACGCCCGGTGGAGGGAATGAACTGCCACAAACCGACTGCGTCGCTGCGCGAGTAGGCCATTGGGTTGTAGGCACTTTCAATCACTGGCAGCAGCGCCAGCTCCAGGGGCATGTTGCGTTCTTCAAGGCGTTCGACGATGTAGTGAATGTAGAGGCTGCCGCGTTCGCCGGCGTTCTCCAGGAAGGACGGGTTACTGGCGAACCACAAGCGCTGTTGCTCGATGCGCGGGTTGACGCCCAGCCCGTCCTGCAATTGAAAGCCCCGTCGCATGCGTTCCCAGACATCCTGGGGTACTTCGGGGCTGGGCTTCTCTGAGAGCCAGATAGGTTTTTGCTTGATCTTGGCAGCAAGATTAGGTTTGGGTTGCACGGTGGATTGTGCAGCGAAATTTGTCGATTGGCAGCCCGCCAGAGTCGCGGACACAGCCACCGCCACAGCTTGAGCCAGGCGGGTCAATGCGTCTGAAGAGATGGATTTACGAATAGATGACGACAT
Protein sequence:
MSSSIRKSISSDALTRLAQAVAVAVSATLAGCQSTNFAAQSTVQPKPNLAAKIKQKPIWLSEKPSPEVPQDVWERMRRGFQLQDGLGVNPRIEQQRLWFASNPSFLENAGERGSLYIHYIVERLEERNMPLELALLPVIESAYNPMAYSRSDAVGLWQFIPSTGRYFNLRQTRAYDGRRDITASTTAALDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPQETKDYVPKFLALSQVVLAPEAYGVNLSPIANTPYFEVVEVKQSMDLSRVAALAEIDEDELFQLNPALKQRTTLDGPQHLLVPSSKAQLLTSTLSTMKPEELLAMRPKKQVFDEVETTRVAGRTRNYKVRNGDNLTLIAKANKVDVHDLQRWNKLNGQALKVGQTLVMQDTRKLVAKADSKKPVQYKVKKGDSLYIVAKRFNVEMQHLKRWNPRTGQALKPGQMLVVSGPR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 52775.6 | 470 | 9.57 | -0.399 | 45.06 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR018392,IPR036779,IPR023346,IPR010511,IPR000189,IPR008258
Pfam: PF01476,PF06474,PF01464
SMART: SM00257
KEGG:
PRINTS: