Effector profile
PlantPEAD ID: PlantPEAD21705 Uniprot ID: I6LCN7 Source: Orthologous
Localization: Apoplastic(Pre) Pathogen taxonomy ID: 33069 Pathogen type: Bacteria
Species: Pseudomonas viridiflava Strain: LP23.1a Other name:
Gene name: HrpW NCBI Gene ID: AY597277
Entry name: I6LCN7_PSEVI Protein name: pectate lyase
DOI:
Gene/Protein information
Gene sequence:
ATGGACACCCACAATCGCGATTCAAATGACGGCGACACTGACACCCATCCTGATGCATTCAGGAGGCTCATCAGTGAACCTGTCCTCCAGGAGGTACGCGCCATGAGCATCGGTATTTCAGGCAATTCCTACCAACCCACAACGCCCGCGCTGGACTTTTCGGCACTGAACGGCAACGGACTCAAGCAGAGCCAGCAGCCCGGTCAGAGCGGTGATCAATCGATAGACCCAGGCGCTTTGCTGTTCAACACCGGCAATCAGCGCAACGTCAATTTCGGACAGCCCGCCGAAACCAAACCGCTGGACTCGACCAAGGACAGCGGCGCCAATGACGATCTGATGAGTATGCTTCAGCAATTAATGGACAACATTTCGTCCATGTTCCAGATGCTGGCAAAAATGCTCAGCGGACAAAACAAAGCCAATGAGCAAACCCAGGACCCAAATGAATTCCAGAACGACAGTGGCCTGGGTTCCGAGCCTACCGACAGCGGTGACGGTGGTGGCACCCCTGAGGCCACGGGCGGTAGTGGCGGTGGCGGCACCCCTGGGGCCACCGGCGGCGGTAGCGGTGGCGGTGGCGGCACGCCTGGGGCCACAGGCAATGGCGGCGGCACAACACACTCGGTAAATACCCCATCAGCCGGTCCTGGCCACACTTCAGGCACAGGATCGACGCCCGGCGCCAATCCTGTGCAGGTCCCCAAATCCTCCGGTGAGACAGTGATGGTGAACGAAACCATCAAGGTCGCTGCGGGCAAGACATTTGACGGCGGCGGCAAAACTTTCACCGCCAGCAACAAACTGGGCACCGGCGACCAGAGTGAGAATCAGAAGCCATTATTCGAACTGGCCGAGGGGGCAACGTTGAAGAACGTCAACCTGGGTGAGAACGAGGCAGACGGTATCCACGTCAAAGCCAAAACCGGCGAGGCCGTGACCATCCAGAATCTTCATGCACAAAATGTGGGTGAAGATCTGATCACCGTTAAAGGGGAAGGCGGTGCCAAGGTCACCAACCTGAACATCCTCGACAGCGGCGCCAAAGGTGCCGATGACAAAATCGTCCAGCTCACCGCTAATACTCACTTGAATGTCGATGGATTTAAGGCTGACGAATTCGGCAAGTTGGTACGCACTAATGGCACACCTGGCCACTCACAATTCAGCGATATGAGTTTGAAACTCAACAACATCGACGCGACCCATGGCAAAGCTGCACTGGTCCAGAGTGACAGCGAGGGTCTGAAACTGACCACAAGCAACATCAGAATGACCGATGTTGCCCATGATTATAAGCTCGCGTCTTCTACTGATCACGTTGAAGCTTGA
Protein sequence:
MDTHNRDSNDGDTDTHPDAFRRLISEPVLQEVRAMSIGISGNSYQPTTPALDFSALNGNGLKQSQQPGQSGDQSIDPGALLFNTGNQRNVNFGQPAETKPLDSTKDSGANDDLMSMLQQLMDNISSMFQMLAKMLSGQNKANEQTQDPNEFQNDSGLGSEPTDSGDGGGTPEATGGSGGGGTPGATGGGSGGGGGTPGATGNGGGTTHSVNTPSAGPGHTSGTGSTPGANPVQVPKSSGETVMVNETIKVAAGKTFDGGGKTFTASNKLGTGDQSENQKPLFELAEGATLKNVNLGENEADGIHVKAKTGEAVTIQNLHAQNVGEDLITVKGEGGAKVTNLNILDSGAKGADDKIVQLTANTHLNVDGFKADEFGKLVRTNGTPGHSQFSDMSLKLNNIDATHGKAALVQSDSEGLKLTTSNIRMTDVAHDYKLASSTDHVEA
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
45333.2 443 4.78 -0.643 30.14
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.