Effector profile
PlantPEAD ID: PlantPEAD21706 Uniprot ID: I6LCT8 Source: Orthologous
Localization: Apoplastic(Pre) Pathogen taxonomy ID: 33069 Pathogen type: Bacteria
Species: Pseudomonas viridiflava Strain: PNA3.3a Other name:
Gene name: HrpW NCBI Gene ID: AY597278
Entry name: I6LCT8_PSEVI Protein name: pectate lyase
DOI:
Gene/Protein information
Gene sequence:
ATGGACACCCACAATCGCGATTCAAATGACGGCGACACTGACACCCATCCTGATGCATTCAGGAGGCTCATCAGTGAACCTGTCCTCCAGGAGGTACGCGCCATGAGCATCGGTATTTCAGGCAATTCCTACCAACCCACAACGCCCGCGCTGGACTTTTCGGCACTGAACGGCAACGGACTCAAGCAGAGCCAGCAGCCCGGTCAGAGCGGTGATCAATCGATAGACCCAGGCGCTTTGCTGTTCAACACCGGCAATCAGCGCAACGTCAATTTCGGACAGCCCGCCGAAACCAAACCGCTGGACTCGACCAAGGACAGCGGCGCCAATGACGATCTGATGAGTATGCTTCAGCAATTAATGGACAACATTTCGTCCATGTTCCAGATGCTGGCAAAAATGCTCAGCGGACAAAACAAAGCCAATGAGCAAACCCAGGACCCAAATGAATTCCAGAACGACAGTGGCCTGGGTTCCGAGCCTACCGACAGCGGTGACGGTGGTGGCACCCCTGAGGCCACGGGCGGTAGTGGCGGTGGCGGCACCCCTGGGGCCACAGGCGGCGGTAGCGGTGGCGGTGGCGGCACGCCTGGGGCCACAGGCAATGGCGGCGGCACAACACACTCGGTAAATACCCCATCAGCCGGTCCTGGCCACACTTCAGGCACAGGATCGACGCCCGGCGCCAATCCTGTGCAGGTCCCCAAATCCTCCGGTGAGACAGTGGTGGTGAACGAAACCATCAAGGTCGCTGCGGGCAAGACATTTGACGGCGGCGGCAAAACTTTCACCGCCAGCAACAAACTGGGCACCGGCGACCAGAGTGAGAATCAGAAGCCATTATTCGAACTGGCCGAGGGGGCAACGTTGAAGAACGTCAACCTGGGTGAGAACGAGGCAGACGGTATCCACGTCAAAGCCAAAACCGGCGAGGCCGTGACCATCCAGAATCTTCATGCACAAAATGTGGGTGAAGATCTGATCACCGTTAAAGGGGAAGGCGGTGCCAAGGTCACCAACCTGAACATCCTCGACAGCGGCGCCAAAGGTGCCGATGACAAAATCATCCAGCTCAACGCTAATACTCACTTGAATGTCGATGGATTTAAGGCTGACGAATTCGGCAAGTTGGTACGCACTAATGGCACACCTGGCCACTCACAATTCAGCGATATGAGTTTGAAACTCAACAACATCGACGCGACCCATGGCAAAGCTGCACTGGTCCAGAGTGACAGCGAGGGTCTGAAACTGACCACAAGCAACATCAGAATGACCGATGTTGCCCATGATTATAAGCTCGCGTCTTCTACTGATCACGTTGAAGCTTGA
Protein sequence:
MDTHNRDSNDGDTDTHPDAFRRLISEPVLQEVRAMSIGISGNSYQPTTPALDFSALNGNGLKQSQQPGQSGDQSIDPGALLFNTGNQRNVNFGQPAETKPLDSTKDSGANDDLMSMLQQLMDNISSMFQMLAKMLSGQNKANEQTQDPNEFQNDSGLGSEPTDSGDGGGTPEATGGSGGGGTPGATGGGSGGGGGTPGATGNGGGTTHSVNTPSAGPGHTSGTGSTPGANPVQVPKSSGETVVVNETIKVAAGKTFDGGGKTFTASNKLGTGDQSENQKPLFELAEGATLKNVNLGENEADGIHVKAKTGEAVTIQNLHAQNVGEDLITVKGEGGAKVTNLNILDSGAKGADDKIIQLNANTHLNVDGFKADEFGKLVRTNGTPGHSQFSDMSLKLNNIDATHGKAALVQSDSEGLKLTTSNIRMTDVAHDYKLASSTDHVEA
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
45328.2 443 4.78 -0.643 30.33
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.