Effector profile
| PlantPEAD ID: PlantPEAD22140 | Uniprot ID: C9SY14 | Source: Orthologous |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 1051613 | Pathogen type: Fungi |
| Species: Verticillium alfalfae | Strain: strain VaMs.102 / ATCC MYA-4576 / FGSC 10136 | Other name: Verticillium wilt of alfalfa,Verticillium albo-atrum |
| Gene name: | NCBI Gene ID: DS985229 | |
| Entry name: C9SY14_VERA1 | Protein name: Pectate lyase | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGTACCCCTCCAAGATTATTTCACTGCTCGCTGCCGTTCCGGCTACCATGGCCTGCCTTGGCTACGAAGGTGGAATCCCGAAGGCTACCGACACCAAGTCACTTGATGCCCCCCAGTACATCAAGGCCGGTGAGGTCTTCGATGCCGAGTGGGTCCGCTATGACCGTGGTCAGCCTTGCGATGGTCAGAGCGAAGGTGGCGAGAAGGACACGGTCTTCGTACTTGAGGACGGCGCCACCCTGAAGAACGTCATCATTGGTGCCGACCAGAAGGAAGGTGTCTACTGCAAGGGCTCCTGCAACCTCGAATTTGTCTGGTTCGAGAACGTTTGCGAAGACGCTATCTCGATCAAGGGTGATGGTCTAGCTACAATCGTCGGAGGCGGAGCCTACGGAGCTGCTGATAAGATCATCCAGCACAACGGCTGCGGAACAGTGCACGTTACCAACTTCTACGCCGAGGACTATGGCAAAGTGTACCGTTCTTGCGGCAACTGCAAGGGCAACTGTGCCCGCACCGTTCACATGGAGGGTGTCACGGCCGTCAACGGCGGCGAGCTTATGGGCATCAACCCCAACCTGGGCGACAAGGCTACCTACTCGAACAACTGCTTCCCCAAGACCGAGTGCCAGGCCTACGAGGGTTGCGACAAGGCGAACGGCGACTGCGAGCCTAGCAAGGCAGGCAAGTGCTGA
Protein sequence:
MYPSKIISLLAAVPATMACLGYEGGIPKATDTKSLDAPQYIKAGEVFDAEWVRYDRGQPCDGQSEGGEKDTVFVLEDGATLKNVIIGADQKEGVYCKGSCNLEFVWFENVCEDAISIKGDGLATIVGGGAYGAADKIIQHNGCGTVHVTNFYAEDYGKVYRSCGNCKGNCARTVHMEGVTAVNGGELMGINPNLGDKATYSNNCFPKTECQAYEGCDKANGDCEPSKAGKC
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 24478.5 | 231 | 4.81 | -0.293 | 21.37 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR004898,IPR012334,IPR011050
Pfam: PF03211
SMART:
KEGG: val:VDBG_09789
PRINTS: