Effector profile
PlantPEAD ID: PlantPEAD24167 Uniprot ID: A0A0P9L1F5 Source: Orthologous
Localization: Cytoplasmic(Pre) Pathogen taxonomy ID: 317 Pathogen type: Bacteria
Species: Pseudomonas syringae Strain: pv. antirrhini strain ICMP4303 Other name:
Gene name: NCBI Gene ID: LJPT01000118
Entry name: A0A0P9L1F5_9PSED Protein name: Type III effector HopC1
DOI:
Gene/Protein information
Gene sequence:
TCAGCGCATTTTTGAAGCGAATATCTGAACGCCGACTAAAGTCAGCCCGTCTGCTGATGATATATTTTCGATAGTGTCCGCCAACGCCTTAGAGTGCGTATGAAACTCTCCTAGATTGGGATCAAACAAGGTTGCGCTTTTGCCGTCGGGTGACACAGAGAAACCCAAAGCATGAGCAATTTCTTCACTGTATATGACCAATACCCCTTTGCGATTCTCTACAATTGCCTCACATAAGGAATTCAGCGCCGCTTCATCAGTAACGATCTGCCTGCCTGATTGCTTACAGGCAATTAGAAATGGCAGCCCAGAGTTTGACTTATCCTCCAACACGGGCCGAAGTTTTAGCCCTTTAATCTCAGCCGCTTGCAACAAGCTTTCCGTACCAGCCATGGCGCCAGTCGACACACCGGGATTTGAGGACGAGTGCTCCAACAGAAACTTATGTTCAGTTCGATAAAAGTTATGAATAGTACGAGCGTGCACCACACCCTCGAATGACCCCAAAAATCTCATTCTTTCTGCCGACGCATAGGGTGTTGCATGGTCTTTCCCTGCATGAATCATATTGATCCAGCTCAACGAAAGGCCAAAGCACATTGCACGCTGGCTTATGCCGTGATTATTCGTGCAAATACCTTGATCAAATCTCGACAATGCAATAGACGATAGCTGAGTCGGAAGCTGTTTCCACCGACCATCGCTGTGCTGAGCAGGATCAGGCATCTGGTTTTCGACCGACGCCGAAGACCCAGCCTGAACGTTAGCGAGGCTCGGGTATTTTCCAATGTGTCCAGAGACGTTTGTCAT
Protein sequence:
MTNVSGHIGKYPSLANVQAGSSASVENQMPDPAQHSDGRWKQLPTQLSSIALSRFDQGICTNNHGISQRAMCFGLSLSWINMIHAGKDHATPYASAERMRFLGSFEGVVHARTIHNFYRTEHKFLLEHSSSNPGVSTGAMAGTESLLQAAEIKGLKLRPVLEDKSNSGLPFLIACKQSGRQIVTDEAALNSLCEAIVENRKGVLVIYSEEIAHALGFSVSPDGKSATLFDPNLGEFHTHSKALADTIENISSADGLTLVGVQIFASKMR
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
28990.8 269 6.63 -0.168 40.31
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.