Effector profile
| PlantPEAD ID: PlantPEAD24754 | Uniprot ID: A0A3M5X1D1 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. apii strain ICMP 11947 | Other name: |
| Gene name: | NCBI Gene ID: RBUG01000035 | |
| Entry name: A0A3M5X1D1_9PSED | Protein name: Type III effector HopH1 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGATCACTCCGTCTCGATACCCAGGCATCTATATCGCCCCCCTCAGTAGCGAACCGACAGCAGCTCACACATTCAAAGAACAGGCAGAGGAAGCGCTTGACCATATCAGCGCCCGTCCCTCTGGCCGTGAGCTGTTACAAGAAATATCCAAGCTTGCCAGTAAAAAAGATAGAAAAGTCACCCTTAAAGAGATTGAAATAAATAACCAATGTTATACCGATGCTGTTCTGAGCAGGAGGCAACTGGAAAAGTACGAACCCGAAGACTTTAACGAGAATCGGCGCATTGCATCACGGCTATCACGAAAGGGGACCTTTACCAAAGGTGAAGGAAGCAATGCGATTATTGGCTGGTCACCAGACAAAGCAAGCATACGCTTAAATCAGAATGGCTCACCGTTACGCCTTGGAATGGATAACGACGACAAAATCACGACCTTGGCTCATGAGCTAGTTCATGTTCGACACGTGTTGAGTGGGAGTTCCTTAGCGGATGACGGAGATCGCTATAATCCACGTACGGGATCTGGCAAAGAGGAACTTAGGGCCGTTGGATTAGATAAGTACAGCTATTCACTTACAAAAGAACCGTCAGAGAACTCCATCCGAGCTGAACACGGTCTGCCTCTGCGCATGAAGTACAGGCCACATCAATAG
Protein sequence:
MITPSRYPGIYIAPLSSEPTAAHTFKEQAEEALDHISARPSGRELLQEISKLASKKDRKVTLKEIEINNQCYTDAVLSRRQLEKYEPEDFNENRRIASRLSRKGTFTKGEGSNAIIGWSPDKASIRLNQNGSPLRLGMDNDDKITTLAHELVHVRHVLSGSSLADDGDRYNPRTGSGKEELRAVGLDKYSYSLTKEPSENSIRAEHGLPLRMKYRPHQ
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 24542.5 | 218 | 8.87 | -0.85 | 41.44 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR028208
Pfam: PF14891
SMART:
KEGG:
PRINTS: