Effector profile
PlantPEAD ID: PlantPEAD24812 Uniprot ID: C0SPN5 Source: Orthologous
Localization: Cytoplasmic(Pre) Pathogen taxonomy ID: 305 Pathogen type: Bacteria
Species: Ralstonia solanacearum Strain: RS1000 Other name: Ralstonia nicotianae, Pseudomonas solanacearum
Gene name: PopC NCBI Gene ID: AB302224
Entry name: C0SPN5_RALSL Protein name: Protein PopC
DOI:
Gene/Protein information
Gene sequence:
ATGCCTATCCTTCCACGCCTATTCCATCGAACATCGCGCACGTCGTCCGCCGACACGCAACGCGACGCCCGGACACCGCCGAACGCCTCGCCGCTGCATGGAGAACCGGGACGGACCCCGCGCTCAAGAGGGGAGCTTGGCCGCAACCTGCGTCTGCGCAGCAACGCGCAGACGAGCGGCACCCCTGGCACTCCGGCACGCCCCCAGATCCGCGCCTCGGCGTCGCGCACCGCACCGAGCACCCCACAGCACCCGCAGGGAACCGAAGGCACTCGCACGGTTCCGAACAGCCCGTTGCACAACGATGCTCGCGTGTTCAGAGAACGCGCAGACCACACCGGGTTGTCGGCCTGGCGCACCGAGATGCTGACCCGGTTTATCGAACACAGCCGCAAACACGGTTTGGCCAACGACTTCGAGCAGGTGCGGGTCTACGACCGACTGTCGCGAGCCGTCGACCACCTGAAGAGCGTCCTCCGGATGAGCGGCGACAGTGTCCAGTTGAAGTCGCTCCCCGTCCCCGAGCTGCCGGATGTCACCTTTGAGATCGCCCACCTGAAGAACCTCGAGACCGTGGATTGCGATCTGCACGCGTTGCCTGCCACGCTGGAAAATCTGTTCTTGCTGGAGACCTTGTCCTTGAAGGGCGCCAAGAACCTCAAGGCCCTGCCCGATGCCGTCTGGCGATTGCCCGCACTGCAAGAGCTGAAGCTCTCGGAAACGGGCCTAAAATCCCTGCCGCCGGTCGGAGGCGGATCCGCACTGCAGCGGCTTACGATTGAAGATTCGCCGCTCGAACAGCTTCCGGCCGGATTCGCTGACCTCGACCAACTTGCCAGCCTGTCGCTGTCGAACACGAAGCTGGAGAAACTGTCTTCCGGCATCGGGCAGTTGCCGGCGCTGAAGTCCCTCTCCCTGCAGGACAATCCAAAGCTGGAGCGGTTGCCCAAGTCGCTCGGGCAGGTGGAAGAGCTCACGCTCATCGGCGGCCGCATTCATGCGCTGCCGTCGGCGAGCGGGATGTCGTCGTTGCAAAAGCTCACGGTGGACAACTCGTCGCTGGCAAAGCTGCCGGCCGACTTCGGTGCGCTCGGCAATCTGGCCCACGTGTCGCTGTCGAATACGAAGTTGCGCGATCTGCCCGCGAGCATCGGGAACTTGTTCACGCTGAAGACGCTGTCATTGCAGGACAATCCCAAGCTGGGGTCGCTGCCCGCTTCGTTCGGGCAACTGTCCGGTCTTCAAGAGCTGACACTCAACGGCAACCGCATTCATGAGCTGCCATCGATGGGCGGGGCATCGTCATTGCAGACGCTCACGGTGGATGACACCGCGCTGGCCGGGTTGCCGGCCGACTTCGGCGCGCTCCGCAATCTGGCCCATCTGTCCCTGTCGAATACACAGCTGCGAGAGCTGCCTGCAAACACCGGGAACCTGCACGCGCTGAAAACGCTGTCGTTGCAAGGCAACCAGCAACTGGCGACCTTGCCCAGCTCGCTTGGGTATTTGTCAGGGCTGGAGGAGCTGACGCTCAAGAACAGCAGCGTCAGCGAGCTGCCACCGATGGGCCCGGGCTCCGCACTGAAGACGCTCACGGTGGAAAATTCACCTCTGACGTCGATTCCGGCCGACATCGGTATCCAGTGCGAGCGGCTGACGCAGTTGTCGCTGTCGAACACGCAACTGCGCGCCCTGCCCTCCAGCATCGGCAAGTTGTCGAATCTGAAGGGGCTGACGCTGAAGAACAACGCCCGCCTTGAATTGCTGTCCGAAAGCGGAGTCCGCAAGCTGGAGTCGGTGAGGAAGATCGACCTGTCGGGTTGCGTGAGGCTCACCGGACTGCCCTCTTCGATTGGAAATCTGCCAAAGCTGAGGACACTCGACTTGAGCGGCTGCACCGGCCTGAGCATGGCAAGCCTGCCGCGTTCGCTCGTGTTGCCGCGCGATGGGCTGAACGTCATCTTTCCGGAGCACCTGAAAACCGACGTGGGCAATGCACGTATTCAACAGAATCCACGTGCCCGGTTGCTGGAAGGCCATCTGGAGCGCCAGAACGAGGCGATGAATCACGCCATGTTCGGGGACGACGAGTCGGTGGGGTCGATGACGAGTGTGCCGGACAATGAAGCCGGGGTCGTGTCGATGGCCTTCCATGCAAAACATGCATATAAGCGCCTCGAAAGGCTCCGGCAGGAGGCCGGCAGCAGTATGGCCGCACCGATGAGGAACAACGATGCGGAATCCATGCGCAGAGCCTTGGCCTATGCGTTCAGGAGCATGTCCGATCTGCCGACGTTCAAGAAACTGGATAACGCGGCACGCTCGCTGCCTTATGAGGTCCAGGAGCAACTGGCCGATCTGGTGGCCGCGCCCGTGGGGCAGAAACTGGTCAAGGCGATCGCCGAGGGTGCCTATGGCGCGGGGCGGGATGCCCGGGCGATCGAGCAGATGTTGCCGGAGCTGGCAACGCGGATCGCCAACCATCCGGAGATCCAGCAACTGCGGGAACAGGCCAAGCGATACCCGAGCAGCCTGCCTCCGGAGAAGCTCGCCGCAAAACTAACGCCCTTGATCCAGCCGCTCTGGGACGGCACACGGGCGGTGGCACCGATGCCAGGCCAACTGCGTCAAGCGCTGCAAGACCTGCTCGTCACCGCTGAGGGGCGTCAACTGGCCAGCGAGATCGACCGGGCGGCGCACAGTCACCGCGCGGGGGATGAGGGGAAGGCGCTGCGTGGTCTCCTGCCCGTTCTGGCCGCCAAGATCGGCTCGGACCCTCGCGTCGTTCGGGTGCGGGAATTCGTGAGCCGGCACACGTTCGGCAGTCCGCAACAGCGCGCGGAAAGCCTTGCGCAGACGCTGACCCCGGTCGTTCAGGAACTCTGGGCGCAAACGCAAGCCGAGGTGGCGAAGCAAGGCCAGACGCCCGCGGCAAGTCCGTCGAGGCAGCGTTGA
Protein sequence:
MPILPRLFHRTSRTSSADTQRDARTPPNASPLHGEPGRTPRSRGELGRNLRLRSNAQTSGTPGTPARPQIRASASRTAPSTPQHPQGTEGTRTVPNSPLHNDARVFRERADHTGLSAWRTEMLTRFIEHSRKHGLANDFEQVRVYDRLSRAVDHLKSVLRMSGDSVQLKSLPVPELPDVTFEIAHLKNLETVDCDLHALPATLENLFLLETLSLKGAKNLKALPDAVWRLPALQELKLSETGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTLIGGRIHALPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPSMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPPMGPGSALKTLTVENSPLTSIPADIGIQCERLTQLSLSNTQLRALPSSIGKLSNLKGLTLKNNARLELLSESGVRKLESVRKIDLSGCVRLTGLPSSIGNLPKLRTLDLSGCTGLSMASLPRSLVLPRDGLNVIFPEHLKTDVGNARIQQNPRARLLEGHLERQNEAMNHAMFGDDESVGSMTSVPDNEAGVVSMAFHAKHAYKRLERLRQEAGSSMAAPMRNNDAESMRRALAYAFRSMSDLPTFKKLDNAARSLPYEVQEQLADLVAAPVGQKLVKAIAEGAYGAGRDARAIEQMLPELATRIANHPEIQQLREQAKRYPSSLPPEKLAAKLTPLIQPLWDGTRAVAPMPGQLRQALQDLLVTAEGRQLASEIDRAAHSHRAGDEGKALRGLLPVLAAKIGSDPRVVRVREFVSRHTFGSPQQRAESLAQTLTPVVQELWAQTQAEVAKQGQTPAASPSRQR
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
106177 984 9.55 -0.336 44.17
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.