Effector profile
| PlantPEAD ID: PlantPEAD28542 | Uniprot ID: A0A6A3GC39 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 129364 | Pathogen type: Oomycota |
| Species: Phytophthora rubi | Strain: SCRP324 | Other name: |
| Gene name: | NCBI Gene ID: QXFU01009633 | |
| Entry name: A0A6A3GC39_9STRA | Protein name: Reverse transcriptase Ty1/copia-type domain-containing protein | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGCTGGCGAAATGCAGCGCAGAAGGAATGGAGATCGAGCAGTGCGACGTCGACACAGCGTTCCTGTATGGGAAGCTGGAAGAGGAGATCTACATGGAGTTGCCGGAAGGACTCAGGGAGCTACTGGAATTGGCCGAAGCCGAAGGAGAGGACGACGTCGTCTGCATGCTGCTCCAGAGTTTGTATGGACTCAAGCAGGCATCGCGTGTTTGGAACGAGACGATCGACAAGCACCTCAAGAGTATGGGATTCGAGTCTGCTGACGCCGACCCATGCGTCTACACGAAAGGCGAGGGTGAAGATGAATGCATAGTATGTCTCTACGTGGACGACATGCAGATCGCGTCACGACAGAAGGCAGTGATCGCGTCCGTAAAGGCTGGAATCGCGGAGAAGTTCCGGATCAAGGACATGGGAAGAGCTCGTTTCATTCTCGGCATCGAGATCGACTACGACATGGAGCGCAGAACGTTGGGTATCAGCCAGAAGGCGTACACCGAGTCGATTATCAAGAAGTTTGGTCAAGAGAACGCGAAGCCGTGCCTGACACCACTGGAACCAGGTGTGCAGTTGACCAAGGCTGACGAACCCCAGACTGAAGAAGACAAGGCCAAGATGAAGTCGAAGCCTTATCGGTCGCTCGTGGGAAGCCTGATTCGCCAAGCTCAGCCGTTTCCCGGAGAACCCCGGTGA
Protein sequence:
MLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFESADADPCVYTKGEGEDECIVCLYVDDMQIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLIRQAQPFPGEPR
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 25817.6 | 230 | 4.74 | -0.403 | 46.05 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR043502,IPR013103
Pfam: PF07727
SMART:
KEGG:
PRINTS: