Effector profile
| PlantPEAD ID: PlantPEAD28669 | Uniprot ID: A0A6A3HWW7 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 129364 | Pathogen type: Oomycota |
| Species: Phytophthora rubi | Strain: SCRP324 | Other name: |
| Gene name: | NCBI Gene ID: QXFU01003791 | |
| Entry name: A0A6A3HWW7_9STRA | Protein name: Reverse transcriptase Ty1/copia-type domain-containing protein | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGCTGCTCCAGAGTTTGTATGGACTCAAGCAGGCATCGCGTGTTTGGAACGAGACGATCGACAAGCACCTCAAGAGTATGGGATTTGAGCCTTCTGACGCCGACCCATGCGTCTACATGAGAGGCGAGGGTGATGATGAATGCATAGTGTGGCTTAACGTGGACGGCATGCTGATCGCGTCAAGACATAAGGCAGTGATCGCGTCCGTGAAAGCTGGAATCGCGGAGAAGTTCCGGATCAAGGACTTGGGAAGAGCTCGTTTCATTCTCGGCATCGAGATCGACTACGACATGGAGCGCAGAACGTTGGGTATCAGTCAGAAGGTTTACACTGAGCCGATCATCAAGAAGTTAGGTCAAGAGAACGTGAAGCCGTGTCTGACACCACTGGAACCAGGGGTGAAGTTGACCAAGGCTGACGAACCCCAAACTGAAGATGACAAGGCCAAGATGAAGTCGAAGCCTTATTTCGCCAAACTCAGCCGTTTTCTGGAGAATGCCGGTGAAAAGCACTGGGACGCTGGTATCAAGGTGGTGCGCTACCTGTTGAAGACCAAGGACGTGAGGATCGTGTACGATGGCCTACTGGTAGCGCAGCTTGAAGCCTACTCCGATGCGGTCTGGGCCGGCAATCGTGACGACCGACGCTCGGTGAACGGAATGATGCTCATGCTATGTGGTGCTCCTGTGGTGTGGCGCTCGACGTTCCAGAAGATTGTCGCTCTGAGTTCAAACGAGGCCGAATACATGGCGCTGAGCGACTGTGTCAAGTAG
Protein sequence:
MLLQSLYGLKQASRVWNETIDKHLKSMGFEPSDADPCVYMRGEGDDECIVWLNVDGMLIASRHKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKVYTEPIIKKLGQENVKPCLTPLEPGVKLTKADEPQTEDDKAKMKSKPYFAKLSRFLENAGEKHWDAGIKVVRYLLKTKDVRIVYDGLLVAQLEAYSDAVWAGNRDDRRSVNGMMLMLCGAPVVWRSTFQKIVALSSNEAEYMALSDCVK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 28996.7 | 257 | 8.46 | -0.265 | 34.48 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR013103
Pfam: PF07727
SMART:
KEGG:
PRINTS: