Effector profile
| PlantPEAD ID: PlantPEAD28876 | Uniprot ID: A0A6A4C3N1 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 129364 | Pathogen type: Oomycota |
| Species: Phytophthora rubi | Strain: SCRP333 | Other name: |
| Gene name: | NCBI Gene ID: QXFT01003604 | |
| Entry name: A0A6A4C3N1_9STRA | Protein name: Reverse transcriptase Ty1/copia-type domain-containing protein | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCAATTCGATGTCTCGAACTTGTGTCCAACGTTACTCCGCATCATCAAGTAGCGTAGCGTCTTCGACGATAGACCCTTGGTCATGAAGTCGGCGAGCTGGTTCTTGGTGTCCACGTACTCCAGCTCCACTTCGTTGCTCACCACCTTCTCGCGAATGAAGTGGTAGCGAATGTCGATGTGCTTGGTGCGAGCTTGGTAACCGACGTTCTTCGCCAGAGCCATCGCTCCTTGGTTGTCCTCGTAGATCACCGTAGCCCCCACTTGCTCAGCACCAATGTCCTTGAGCAGACGTCGCATCCAGACGCACTCCTTGACACAGTCACTCAGCGCCATGTATTCGGCTTCGGTTGAACTCAGAGCGACAGTCTTCTGGAACGTCGAGCGCCACACCACAGGAGCACCACATAGCATCAGTAGCATCCCGCTCACCGAGCGTCGGTCGTCACGATTGCCGGCCCAGTCCGCATCGGAGTAGGCTTCAAGCTGCGTTCCCAGTAGGCCATCGTACACGATGCCCACATCCTTGGTCTTCAAAAGGTAGCGCACCACCTTGATACCAGCATCCCAGTGCTTCTCACCGGAGTTCTCCAGAAAACGGCTGAGCTTGGCAACTGCAACTGAAATGTCAGGTCGCGTTCCACACGCCAAGTACAT
Protein sequence:
MYLACGTRPDISVAVAKLSRFLENSGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGLSSKTLRYLMMRSNVGHKFETSN
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 24466.1 | 217 | 8.26 | -0.234 | 26.54 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: