Effector profile
| PlantPEAD ID: PlantPEAD33185 | Uniprot ID: A0A1B5D375 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 286 | Pathogen type: Bacteria |
| Species: Pseudomonas | Strain: sp. 44 R 15 | Other name: |
| Gene name: | NCBI Gene ID: CVTU01000044 | |
| Entry name: A0A1B5D375_9PSED | Protein name: Type VI secretion system effector, Hcp1 family | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCAGCGCTTGGTGTTGGAACGGATGTTCCAGCCGAACTTGATCGCGCCGCCATCTTTGGTGCCGTCGGCTTTCTGCGGCTGGTAGTCGACCATCACCTGGGCGAAGTTCAGGGTGACGTTTTCGGTCAGGCGGTCATCGGAACCCGAACCGCCGGTGCTCAGCGAGGTGACCAGCACTTCTTCCAGGTTGATCACCATGTACTCGACCTGGCTTTCGCCACCGGCCTTGCGCACGGTCAGCTTGACCTTGTCGATGTGCTTGCCGCTGGCGCAGTGCATCATCAGGTTCGGCGACGCCTTGTCGACGTATTTGGTCAGCGACAGGTCCTGGATATTCACCTTGCCCGCGCCACCGCCACCGCCCACATGCATGTTGCCGGACTGGGCCATGCCCCAGCTCCAGTTCAGCACGTCGATTTCGTCCTTGTGGGCCTTGTCCATGGACTCGCCCTTGATGTCGCCGATCTTGATGAAAATATCAACAGCCAT
Protein sequence:
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMAQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCASGKHIDKVKLTVRKAGGESQVEYMVINLEEVLVTSLSTGGSGSDDRLTENVTLNFAQVMVDYQPQKADGTKDGGAIKFGWNIRSNTKR
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17502.9 | 162 | 6.41 | -0.364 | 39.12 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG:
PRINTS: