Effector profile
| PlantPEAD ID: PlantPEAD33207 | Uniprot ID: A0A0U4YSG4 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 346 | Pathogen type: Bacteria |
| Species: Xanthomonas citri | Strain: pv. citri strain JP541 | Other name: |
| Gene name: Hcp | NCBI Gene ID: CCXZ01000190 | |
| Entry name: A0A0U4YSG4_XANCI | Protein name: Hcp1 family type VI secretion system effector | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TTAGGCCTTGGCCACACCTTGGATGTCGTAGGTGAATTCCTTCGCGCCACCCTGGGAGGCACCCTTGTCGTCCTGCGGCTGGAAGCCGTACTTGAACTTGCCGAAGTGCAGCGTCACGTTTTCGGTGAGGCGGTCTTCGCCACCGGAACCGCCGGTCGACAGCGAGGTAATCAGTACGCCTTCGCTCAACTCCAGGGTGAGAAAGTCGCTCTGCTCGCCGGTGGCGTTGGTGACGTACAGCCAGGCGTTTTCCACGCGCGCACCGGTGCACACCGCATCGAGCAATGCATTGGAGCAGCCATCCACGTACTTGGTGACGGAGATGTCCTGGACATGCGCCTTGCCACCGCTGGCCGAGCCGCCACCGGTGTGCAGGTCGCCGGAATTACTCGCGCCCCACGACCAGGCCAGGATCGGGATCTCGCCCTTGTGCTTCTTGTGGTTGGATGCGCCTTCGATCTTGACCTTGCCACTGCCGAACTTGATATGCATGTCGAACGCCAT
Protein sequence:
MAFDMHIKFGSGKVKIEGASNHKKHKGEIPILAWSWGASNSGDLHTGGGSASGGKAHVQDISVTKYVDGCSNALLDAVCTGARVENAWLYVTNATGEQSDFLTLELSEGVLITSLSTGGSGGEDRLTENVTLHFGKFKYGFQPQDDKGASQGGAKEFTYDIQGVAKA
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17542.5 | 167 | 5.82 | -0.322 | 28.12 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG: xcf:J172_04313,xcm:J164_04273,xcn:J169_04320,xcr:J163_04272,xcu:J159_04272,xcw:J162_04278
PRINTS: