Effector profile
| PlantPEAD ID: PlantPEAD33220 | Uniprot ID: A0A3S0JTQ4 | Source: Orthologous |
| Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 40324 | Pathogen type: Bacteria |
| Species: Stenotrophomonas maltophilia | Strain: MDMC339 | Other name: Pseudomonas maltophilia,Xanthomonas maltophilia |
| Gene name: | NCBI Gene ID: RXLZ01000009 | |
| Entry name: A0A3S0JTQ4_STEMA | Protein name: Hcp1 family type VI secretion system effector | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCAGCCCTTGGCCACGGCCTGCATGTCGTAGGTGAAGGTCTTGGCCGCGCCGTCGGCGGTGCCGTCGGGCTTCTGCGGCTGGAACCCATACTGGAACTTGCCGAAATGCAGGGTGATGTTCTCGGTCAGGCGGTCCTCACCGCCGGAGCCGCCGGTGGATACCGATGTGATCAGCACGCCGTTGGACAGGTGCAGGGTCACGTAGTCGGTCTGCTCGCCGGTGGCGTTGGTCACGTACAACCACGCCTCCTCGATGCGTGCACCGGTGCTGGCAGCCTGCAGCAGCGCGTTGGAGCTCTTGTCCACGTACTTGGTGATGGAGATGTCCTGCACGTGGGCCTTGCCACCGGAACTGACGCCACCGCTGTGCAGGTCGCCGCTGTTGCTGACGCCCCACGACCAGGCCAGTACCGGAATCTCGTTCTTGTGCTTGGCGTGGGTCGAGCCACCTTCGATGGTGACGCTGCCACCCTTGAACTTCAGATGCATGTCGAATGCCAT
Protein sequence:
MAFDMHLKFKGGSVTIEGGSTHAKHKNEIPVLAWSWGVSNSGDLHSGGVSSGGKAHVQDISITKYVDKSSNALLQAASTGARIEEAWLYVTNATGEQTDYVTLHLSNGVLITSVSTGGSGGEDRLTENITLHFGKFQYGFQPQKPDGTADGAAKTFTYDMQAVAKG
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17522.4 | 166 | 6.13 | -0.319 | 29.72 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG:
PRINTS: