Effector profile
| PlantPEAD ID: PlantPEAD33245 | Uniprot ID: A0A2L1IN53 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 286 | Pathogen type: Bacteria |
| Species: Pseudomonas | Strain: sp. SWI36 | Other name: |
| Gene name: | NCBI Gene ID: CP026675 | |
| Entry name: A0A2L1IN53_9PSED | Protein name: Type VI secretion system tube protein Hcp | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TCAGGCGGTAGTACGTTCATTCCAGGAATCCGAATGGATGATGTTTCCATCCTTGAATGTCCAGGTGATTTTTTCGTAACGCAATTCGACCGATTCCAAATGGTTGTGCTTTTCTTTCTCAGGATCTTTGATGTCGTGCATTTTTGGTGCAACCTGAACGACCTTCACGTTCTCCAGCTTGGTATTGAAATACTCAACTTCCTGGCCGGCATCATTAATCTTGTACCACTTGAACTCCGCCGACTTGAGCGTTTGACCGGTTGTGACGGCCTTATAGAGATACGGGGAAGACGCATCAATCTCTTTGGTGAAAAGGAATGGGGTATGGATGCGCGTACCGGTCAATCTGCCAGTGTTGTTATCAGTCGGAATGTACAAGTTATGATCCTGAGCGACGACCTCGATACTCCCACCTCGATCTTGAACATCCACCGAGCCTTTGATATCGGCACCGCCATCGTCTTTCAGCCACAGGTAAACAGGAATAGCCAT
Protein sequence:
MAIPVYLWLKDDGGADIKGSVDVQDRGGSIEVVAQDHNLYIPTDNNTGRLTGTRIHTPFLFTKEIDASSPYLYKAVTTGQTLKSAEFKWYKINDAGQEVEYFNTKLENVKVVQVAPKMHDIKDPEKEKHNHLESVELRYEKITWTFKDGNIIHSDSWNERTTA
Loading ...
Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 18613.8 | 163 | 5.67 | -0.658 | 29.69 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG:
PRINTS: