Effector profile
| PlantPEAD ID: PlantPEAD33280 | Uniprot ID: A0A0L1MJG0 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: Riq4 | Other name: |
| Gene name: | NCBI Gene ID: LFQK01000011 | |
| Entry name: A0A0L1MJG0_PSESX | Protein name: Type VI secretion effector protein (Hcp) | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TTACTTGACGAGCTTGTTGGCGGCCATGTCCCAGGTCGAGGCAGCCGTGCCTTCCTTGGTGCCGTCGTCTTTCTGGGCGGTGAGTTCCCACTTGATCTTGGTGAAGTTCAGTGACAGGGTTTCCACCGGTTTGCCACCCGTACCACCACTGACGCTGACGTTGGACAGCACGACGTTGCTCAGGGTGTAGATGATGAACGGCATCAGCTGACCGCTGCCTTCGGCGGCGTTTCGGCCAATGGTAATTTTGGCTTCGGGGATCGGTTTGCCGGCGCAGCAATATTCGTTGAGGGAGGGCGTCGAGCTGTCGACGAATTTGGTCAGGGTGAACTCGCCGATGTGCGGCTTGCCGGAGGTTCGCTCCGAGTTGCTGACGTCGTTGGTCACCTGCATGGCCACGTTGTGGCTGTAGGACATGACTTCGATCTTGTCCTTGTAACCCTCGAGCAGGCTATCGCCTTTGATGTCGCCGCCGAGGTCGAGAATGATTGCATCCAT
Protein sequence:
MDAIILDLGGDIKGDSLLEGYKDKIEVMSYSHNVAMQVTNDVSNSERTSGKPHIGEFTLTKFVDSSTPSLNEYCCAGKPIPEAKITIGRNAAEGSGQLMPFIIYTLSNVVLSNVSVSGGTGGKPVETLSLNFTKIKWELTAQKDDGTKEGTAASTWDMAANKLVK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 17621 | 165 | 5.18 | -0.224 | 21.6 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR036624,IPR008514
Pfam: PF05638
SMART:
KEGG:
PRINTS: