Effector profile
| PlantPEAD ID: PlantPEAD33335 | Uniprot ID: A0A0Q0B5W9 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 317 | Pathogen type: Bacteria |
| Species: Pseudomonas syringae | Strain: pv. tagetis strain ICMP4091 | Other name: |
| Gene name: | NCBI Gene ID: LJRM01000088 | |
| Entry name: A0A0Q0B5W9_9PSED | Protein name: Type III effector HopV1 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGTTGGATAAAGTGGGGAGCAGTGCCCGTGTAGATAATGCACAGCATGTCGAAGCTACTGCAGGGCCGGAGCCTATGAGGCTTGATGCTGCCCAAGGCCAGAAGCCCAAAGCCCCTATGGATGCACCGTCATCATTGCGTTTGCGAGCGATAGCGGGTGGCATGCCCAGTGAAGAAATAGGAAAAATTGCACCTGCAGATGTAAATCAGCCGCCACCTACTCCTACTGATGTTCGCCCAGAAACGGGTGTAGATCCTGTGAGACTCTTCGTCAAACTGATGGTAGGAACTCTGGCGCTGTCAACAGGAGTCCGTTTTGCAAGATACCCAGGTGATTTTGCGAAGGATCCGGGAGGCAGTGTATGGGCAGCAATCAATCTGCAGCATCGCTCAAGTGTCACACATCTTGAACAAGGCAATCAGACGGTTCTTGAGCGTTTCTGTGCACACATTCCAAAAGACAGCGCGTGTTTTAAAGCTCGCGCTGAGGTCTCACACGATATTCCCTCAGGCGTGGCAGGGCAGTGGAATCGTAAAACCCAGCGGGTAAAATTGAACCCTAACATTCATTTCGAGAGCCATCCGGCAGCAGTTGCCGGACATGAGTTCATACACTGTTACACACACCCTGAGTTTGTCGAACGCCATATAAAACATCCGCACTGGAAAGCCCTGAACGAAGGGTTGACGACTCGTTTGACAGAGAAACTGCCAGACCCCAAGCGTCTCTTGCCCATTCCCTTGGCCAAGGATCCCTATCATGGTTTCAAGCTGTCCACCGGGGACTCCTGGCCGGATGCGGCCAAGCGAATCGAAGACGAGGTTGGCGAAGATGTGTTGTTGAAAGCGTTCTTTGGCGGCGATGACCACGCTATTGGTGAAGTAGCTAAAGCCGCTGCTCAGATCTACCCCAAGATTGCCTCAAGTATTACCGAGAGAGAGTTGTACCAAGCGGGCAGCATGCGTGGAGGACAACAGCTTGCCGAGTGTTACGTAGGTGCGTTGCTAAAAAACGGTCAGAAACTGCCTGACAGTTTTACGAATTATCTGCTACCTGTATTCAGCTATTCAGATATAAGCCCTGATCACGCAAAAAAAATACAGGCGCAAGCGAAAAAAAGTCAGAAGCGGATGGGAATTGTGTTCGATGCCGCGTTCTTTTCACCTGACCTGAAGACCCAGAGATTGGCACTTGGCATGCTGCGTGAGGACCTGCTGATACACTGGAAAAAAGTTATTCCGGATAGGAAGCAAGGTACGCGTTACTCAAGACTTAGTTAA
Protein sequence:
MLDKVGSSARVDNAQHVEATAGPEPMRLDAAQGQKPKAPMDAPSSLRLRAIAGGMPSEEIGKIAPADVNQPPPTPTDVRPETGVDPVRLFVKLMVGTLALSTGVRFARYPGDFAKDPGGSVWAAINLQHRSSVTHLEQGNQTVLERFCAHIPKDSACFKARAEVSHDIPSGVAGQWNRKTQRVKLNPNIHFESHPAAVAGHEFIHCYTHPEFVERHIKHPHWKALNEGLTTRLTEKLPDPKRLLPIPLAKDPYHGFKLSTGDSWPDAAKRIEDEVGEDVLLKAFFGGDDHAIGEVAKAAAQIYPKIASSITERELYQAGSMRGGQQLAECYVGALLKNGQKLPDSFTNYLLPVFSYSDISPDHAKKIQAQAKKSQKRMGIVFDAAFFSPDLKTQRLALGMLREDLLIHWKKVIPDRKQGTRYSRLS
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 46923.6 | 426 | 9.12 | -0.444 | 34.1 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: