Effector profile
PlantPEAD ID: PlantPEAD35560 Uniprot ID: Q20IN6 Source: Orthologous
Localization: Apoplastic(Pre) Pathogen taxonomy ID: 36746 Pathogen type: Bacteria
Species: Pseudomonas cichorii Strain: Other name:
Gene name: HrpW NCBI Gene ID: DQ168848
Entry name: Q20IN6_PSECI Protein name: pectate lyase
DOI:
Gene/Protein information
Gene sequence:
TCAGACCTCCTTGTGGTTGGTAGAACCCGGCAGCTTGTCGTAAGGATGCTCTACGTTCTTCAGGTTGATGCCGCTGGTGGTCAGGTTCAGGCCTTCACTGTCGCTCTTCACGAAGGAGAACTTGCCGTTTTCAGCGTCGACGTTCTTCAGGTCCAGGTTCCAGTTGCCCTGCTGCCCACCGTTGGTGCGCATGAAGGTTCCGAAATCCTTGGCCTTGAAGTTGTCAACGCTCACGTTGGCGTCGGCATTGAGCTGGAAGATCTTGTCATTGGCGCCTTGGGCACTGCTGTTGGTGATGTTCAGGTTGGTGACTTTGGCACCGCCCTCGCCCTTCACGGTCAGCGCGTCTTCACCGACGTTGGTCCAGTGAACGTTATCGACGTTTACAGCCTTCTCGTTGGCAGCGCGGACATGCACACCGTCAGCGGCGTTTTCACCGAAGGTCACGTTTTTCAGGGTGGCACCTTCAGCCAGTTCGAAGATTGGCTTCTGTCCTTCACCCTGTCCGCCATCACCCAGGCTAGGGCCGGCAGTGAAGGTCTTGCCTTGGCCATCGAACACTTCGCCCGGGCCTACCTTGATCGTTTCGTTGACTACGGTCGGGCTACCCGAAGCAGTCGGGAAAGACACTGGAGTGGATGAACCGGCAGAACCAGTGCCTGCAGTACCGCCAGTGCCAGGAGTCGTGGTCGGAGCTGTGCCACCGATGGATGGAGTGCTACCACCGCCACCGCCGCCACCTACAGATGGAGCACCGCCGCCACCACCGCCACCTACAGACGGAGCACCGCCGCCACCGCCGCCACCCACAGATGGAGCACCGCCGCCGCCACCGCCACCTACAGACGGAGCACCACCGCCACCGCCGCCACCTACAGACGGAGCACCGCCACCACCGCCGCCACCTATGGACGGAGCACCACCGCCGCCACCACCGCCGCCCTTGCTTGAGGTGTCAGACGGCTGGTTGAAGGTTTCCGGATGGCTGTCCATGAACTGGGCGATCATTTCCAGCAGCTCTTTGAGCTTACCGTCCTGGGATACTTGGCCACCGCCATCGGAAGACGGCTGGATCGCGTTATCCAGAGAACCGCCACCCAGACTTTTCATCAGCGTGTTGACCAGATCTTCGACGCTGCCCGAGCCACCGCCCGCGCCCTGAGTACCGCCCAGGCCCTGGCCTGAACCCAGACCTTCAAGGCCCTTGGTACCGCCGCCACCGCCTGCACCGCTGACTGGCGAGCCCGAACCGGAACCTGTACCACCACCGCCTTCGCCAGTGCCCGACGAAGAGTCGGAGCCGCCGAGAATTTTTTCAAACAGAGCCATCAAAACCTGAGTCAGAAGCTCTTTGGATGATTCGTCACCGGTGCCGTTCGCCCCCTTGGAGCCTTCACCCTTCTGGTCGCCGCCTTGCAGGGACTGCAGCAGGGAATCGATGTCGCTCTGGCCCGACTTGCCAGCCTGGCCCGCACCGGAACCCGAACCTGCGCCGGCACCACCACCGGAGCCAGAACCGGAACCGAGCAACATTTCAGCCAGCATGCCGGCCAGTTGCTCCAGAGCGGATTGTCCGCCCTGCCCCGTGGCAGCACCTGCCGTAGCCCCACCCAGACCACCGGATAGTCCCGAAAGACCGGAAAGACCACTTTGGGAAAAACCCGAAATACCCGCGATATCAGCCAT
Protein sequence:
MADIAGISGFSQSGLSGLSGLSGGLGGATAGAATGQGGQSALEQLAGMLAEMLLGSGSGSGGGAGAGSGSGAGQAGKSGQSDIDSLLQSLQGGDQKGEGSKGANGTGDESSKELLTQVLMALFEKILGGSDSSSGTGEGGGGTGSGSGSPVSGAGGGGGTKGLEGLGSGQGLGGTQGAGGGSGSVEDLVNTLMKSLGGGSLDNAIQPSSDGGGQVSQDGKLKELLEMIAQFMDSHPETFNQPSDTSSKGGGGGGGGAPSIGGGGGGGAPSVGGGGGGGAPSVGGGGGGGAPSVGGGGGGGAPSVGGGGGGGAPSVGGGGGGGSTPSIGGTAPTTTPGTGGTAGTGSAGSSTPVSFPTASGSPTVVNETIKVGPGEVFDGQGKTFTAGPSLGDGGQGEGQKPIFELAEGATLKNVTFGENAADGVHVRAANEKAVNVDNVHWTNVGEDALTVKGEGGAKVTNLNITNSSAQGANDKIFQLNADANVSVDNFKAKDFGTFMRTNGGQQGNWNLDLKNVDAENGKFSFVKSDSEGLNLTTSGINLKNVEHPYDKLPGSTNHKEV
Protein structure:
AlphaFold
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Main properties of effector
Molecular weight Sequence length Theoretical pI GRAVY Instability index
52380.4 561 4.55 -0.325 32.33
Plant infestation information
Experimental plant:
Susceptible plant: Disease name:
Host classification: NCBI Species:
Pathogen-plant protein interaction
Uniprot ID Protein name Gene name Species Protein sequence
No Record found.