Effector profile
| PlantPEAD ID: PlantPEAD36187 | Uniprot ID: A0A0P9NQT3 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 86840 | Pathogen type: Bacteria |
| Species: Pseudomonas cannabina | Strain: ICMP2823 | Other name: |
| Gene name: | NCBI Gene ID: LJPX01000299 | |
| Entry name: A0A0P9NQT3_PSECA | Protein name: Type III effector hopD1 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
GTGTGTCCATGTCAGTGGTGTGCTTCCCACTCGACGCATTCGCCGATTTTGAGTCTGTCTTTGGAACCCAAGAGCCCTTGCGACCACACATTGGATCCGATTAATTCATCCGGGACAGCTGATAGCGCTATGAATCCTCTACAATCTATTCAACACAACATTACAACTCCCCCAATCAGTGGCGGTCAGCCATTAGACGCGGTGGGCCCTCAGGCCCAGCAATCCCATCCTGAAAGTATTTCACTTTCTCAATTGAGCGACAGCGCTCACCAAGCTCTCAACGCTCTAGCAAGCTCCTCAGCTAGTGCCGAACACCAAAGCATTGCATCATTGGTACTCAACGCTCTGCTGGATGGCACACTTCAATTTCAATCCAGTAACGACATGCAAGTAACCTATCAAGCGCCAATCTGTCTGCCAGATGATACCGATACCGTAAGAGCCGACCACTTGATTAATAACGAGCTGACGGTTCAGGCCCGATTAAATGATCAGTCGGAGTACGACATCGTCAGCGCACATTTGCATGGCTCTTCGAAAGCCATATCCTTCGACGTACCCAGCCCCCCGCCCGCACATGGTTCAGCATCTTCTGTCTTGAGTGAACGGACCCATCTAGGTATGAGTCGCGTTCTCTCACAAGATGCAGTAGACAGCAGTAGCCTGGAAACTCCGTTACTGAGCTCGCCAGACCATTCTCGTCCGCCATCACAGCCAAAGCCCGTGCATATCGGGTCGGTCCGCAGGGACTCTGGTAGCCTTGTTTCCGATAACCCGGTAGTGCAGGCCCTGCTATCGTTTGCGCAGGCCGACCAGGCATTTCCACCACAGGCCGCGAGCATTGCCGGGGTCCAGCTGGAAATGCGGCCACGTCGGGATATTGAGAAAGCACTTGAGGAATTCAAAGGCGCCTTCACTGTGGAGAAGGCGCAACTGATGTCCGGTGCCAACTCGTCGGAGCGTGTAGATGAGGATGTCAACGCAGACATCCATATCCCCTTATTGCTCAAGGCCATCGAGCGGGGGGCTGCGGCATTTGGTCCAAACGCATCAATCGGCCAGAATAGCGCGAAAGCGTTTCTCGCCTCATGTGCTCCCAAGATCACGTCCAATGACGATGTCCTCTCCGAGTTCATCAACCAGAAACTCAAGGGGGACGACGATCTTCAGGTTCGCCTGGGCGCACAGGAATTGTTGCATGTAGCCACCAAGAAGGAATTCCAGCTCGGCGGTCTAGCCGGCAGCATCGGGGTCAGCAGCATACTCGGCTCGGCATGGGAGCTTGGCGCTTCTGAGCTGTTGAAAAATGCCATCTTCGGCAAAAATTTCTCACCGAGCCAATATGCCCTGCAATTGGCTGGAATCGATTCAGTGCCTCCTTTGATTATCGAGTCCATGGACACCATGTGCGTACTTGCCATCATCAAGGGCATGAAAGGTGAGGAGTGGTCCATGAGCGATCTACTTCCCAAGGCGTTGAAGGCCGGTGCCATTTCCTCGGTGGTGTCATTCCCCAATAATGTTTTGCAGTATGCAGGTTTCAAATCCAGAGTCGGCGATCTTGCGGCAAACTCAGTGACAACTGAAGGGGCCATCTTTGGCGCCGCCTCCGGTATTCCACCCGAGGTCAAGGAAAGTGAAGAGCTGATGCGTGCTGGCTTATTCCAGAGCATGAAGGACGGCGTGATGGCTCATCCAGGCGAGGGGGTGGACACCAAAAAGACGATTGAGCGGATGACGCGCCATGCGCTGGATATCGCTCCGGGCGAAAGCACCGCTGTCAAGTCCATGGGGCTGGCATCGATTGTCGGGATGATTCCACTGATTGCCAGCAACAAGGCAACCGGGCTGCTGTCGGAACAGGTACTGCGTATTTTCCGGAGCGCCGTCTTCAATCCAAT
Protein sequence:
MCPCQWCASHSTHSPILSLSLEPKSPCDHTLDPINSSGTADSAMNPLQSIQHNITTPPISGGQPLDAVGPQAQQSHPESISLSQLSDSAHQALNALASSSASAEHQSIASLVLNALLDGTLQFQSSNDMQVTYQAPICLPDDTDTVRADHLINNELTVQARLNDQSEYDIVSAHLHGSSKAISFDVPSPPPAHGSASSVLSERTHLGMSRVLSQDAVDSSSLETPLLSSPDHSRPPSQPKPVHIGSVRRDSGSLVSDNPVVQALLSFAQADQAFPPQAASIAGVQLEMRPRRDIEKALEEFKGAFTVEKAQLMSGANSSERVDEDVNADIHIPLLLKAIERGAAAFGPNASIGQNSAKAFLASCAPKITSNDDVLSEFINQKLKGDDDLQVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQYALQLAGIDSVPPLIIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNNVLQYAGFKSRVGDLAANSVTTEGAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHPGEGVDTKKTIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFRSAVFNP
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 66769.4 | 633 | 5.18 | -0.1 | 46.84 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: