Effector profile
| PlantPEAD ID: PlantPEAD40090 | Uniprot ID: A0A3M3S1R1 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 86840 | Pathogen type: Bacteria |
| Species: Pseudomonas cannabina | Strain: ICMP 15203 | Other name: |
| Gene name: | NCBI Gene ID: RBPJ01000045 | |
| Entry name: A0A3M3S1R1_PSECA | Protein name: Type III effector HopV1 | |
| DOI: | ||
Gene/Protein information
Gene sequence:
TTACTTTCTATCCGGAATAACTTTTTTCCAGTGCATCAGCAGGTCCTCCCGTAGCATGCCAAGTGCCAGTCTCTGGGTCTTCAGGTCAGGTGAAAAAAACGCTGTATCGAACACAATTCCCATCCGCTTTTGACTTTTTTCCGCTTGCGCCTGTATTTTTTTCGCGTGACCAGGGCTTATATCTGAATAGCTAAATACAGGTAGCAGATAATTCGTAAAACTGTCAGGCAGTTTCTGACCGTTTTTGAGCAAAGCACCTACGTAGCACTCGGCCAGCTGTTGTCCTCCACGCATGCTGCCCGCTTGATACAACTCCCTCTCGGTAATACGTGAGGCAATCTTGGGGTAGATCTGAGCAGCGGCTTTAGCTACTTCACTAATAGCCTGGTCATCGCCGCCAAAGAACGCTTTCAACAACACATCTTCGCCAACTTCGTCTTCGATTCGCCTGGCCGCATCCGGCCAGGAGTCCCCGGTGGACAGCTTGAAACCATGATAGGGATCCTTTGCCAAGGGAATGGGCAAGAGACGCTTAGGGTCTGGCAGTTTCTCTGTCAAACGAGTCGTCAACCCTTCGTTCAGGGCTTTCCAGTGCGGATGTTTTATATGGCGTTCGACAAACTCAGGATGCGTGTAACAGTGTATGAACTCATGTCCGGCGACCTGTGCCGGATGGCTCTCGAAATGAATGTTAGGGTTCAGTTTTACCCGTTGGGTTTTGTGGTTCCACTGCCCTGCCACGCCTGAGGGAACATCGTGTGTGACGTCAGCGCGAGCTTTGAAACATGCACTGTCTTTTGGAATATGTGCACCGAAACGCTCAAGAACCGTCTGATTGCCTTGTTCAAGATGTGTGACGCTAGAGCGATGCTGCAGATTGATTGCTGCCCATACACTGCCTCCCGGATCCTTCGCGAAATCACCTGGGTATCTTGCAAAACGGACTCCTGTCGACAGCGCCAGAGTTCCTACCATCAGTTTAACGAAGAGTCTCACAGGACCTACACCCATTTCTGGACGAACATCAGCAGGTGTAGGCTGATTCACGTCAGCAGGTGCAGTCGTTCCTGCTTCTTCACTGGGCATGCCACCTGCTATCGCTCGCAAACGTAATGATGACGGTGCATCCATAGGGGCTTTGGGCTTCTGGCCTCGGGCAGCATCAAGCCGCATAGGCTCCGGCCCTGCAGGCGCTTCGACATACGGGGCATTATCTACACGAGCACTGTTCCCCACTTTATCCAACAT
Protein sequence:
MLDKVGNSARVDNAPYVEAPAGPEPMRLDAARGQKPKAPMDAPSSLRLRAIAGGMPSEEAGTTAPADVNQPTPADVRPEMGVGPVRLFVKLMVGTLALSTGVRFARYPGDFAKDPGGSVWAAINLQHRSSVTHLEQGNQTVLERFGAHIPKDSACFKARADVTHDVPSGVAGQWNHKTQRVKLNPNIHFESHPAQVAGHEFIHCYTHPEFVERHIKHPHWKALNEGLTTRLTEKLPDPKRLLPIPLAKDPYHGFKLSTGDSWPDAARRIEDEVGEDVLLKAFFGGDDQAISEVAKAAAQIYPKIASRITERELYQAGSMRGGQQLAECYVGALLKNGQKLPDSFTNYLLPVFSYSDISPGHAKKIQAQAEKSQKRMGIVFDTAFFSPDLKTQRLALGMLREDLLMHWKKVIPDRK
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 26335.1 | 415 | 9.02 | -0.444 | 36.5 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: