Effector profile
PlantPEAD ID: PlantPEAD40090 | Uniprot ID: A0A3M3S1R1 | Source: Orthologous |
Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 86840 | Pathogen type: Bacteria |
Species: Pseudomonas cannabina | Strain: ICMP 15203 | Other name: |
Gene name: | NCBI Gene ID: RBPJ01000045 | |
Entry name: A0A3M3S1R1_PSECA | Protein name: Type III effector HopV1 | |
DOI: |
Gene/Protein information
Gene sequence:
TTACTTTCTATCCGGAATAACTTTTTTCCAGTGCATCAGCAGGTCCTCCCGTAGCATGCCAAGTGCCAGTCTCTGGGTCTTCAGGTCAGGTGAAAAAAACGCTGTATCGAACACAATTCCCATCCGCTTTTGACTTTTTTCCGCTTGCGCCTGTATTTTTTTCGCGTGACCAGGGCTTATATCTGAATAGCTAAATACAGGTAGCAGATAATTCGTAAAACTGTCAGGCAGTTTCTGACCGTTTTTGAGCAAAGCACCTACGTAGCACTCGGCCAGCTGTTGTCCTCCACGCATGCTGCCCGCTTGATACAACTCCCTCTCGGTAATACGTGAGGCAATCTTGGGGTAGATCTGAGCAGCGGCTTTAGCTACTTCACTAATAGCCTGGTCATCGCCGCCAAAGAACGCTTTCAACAACACATCTTCGCCAACTTCGTCTTCGATTCGCCTGGCCGCATCCGGCCAGGAGTCCCCGGTGGACAGCTTGAAACCATGATAGGGATCCTTTGCCAAGGGAATGGGCAAGAGACGCTTAGGGTCTGGCAGTTTCTCTGTCAAACGAGTCGTCAACCCTTCGTTCAGGGCTTTCCAGTGCGGATGTTTTATATGGCGTTCGACAAACTCAGGATGCGTGTAACAGTGTATGAACTCATGTCCGGCGACCTGTGCCGGATGGCTCTCGAAATGAATGTTAGGGTTCAGTTTTACCCGTTGGGTTTTGTGGTTCCACTGCCCTGCCACGCCTGAGGGAACATCGTGTGTGACGTCAGCGCGAGCTTTGAAACATGCACTGTCTTTTGGAATATGTGCACCGAAACGCTCAAGAACCGTCTGATTGCCTTGTTCAAGATGTGTGACGCTAGAGCGATGCTGCAGATTGATTGCTGCCCATACACTGCCTCCCGGATCCTTCGCGAAATCACCTGGGTATCTTGCAAAACGGACTCCTGTCGACAGCGCCAGAGTTCCTACCATCAGTTTAACGAAGAGTCTCACAGGACCTACACCCATTTCTGGACGAACATCAGCAGGTGTAGGCTGATTCACGTCAGCAGGTGCAGTCGTTCCTGCTTCTTCACTGGGCATGCCACCTGCTATCGCTCGCAAACGTAATGATGACGGTGCATCCATAGGGGCTTTGGGCTTCTGGCCTCGGGCAGCATCAAGCCGCATAGGCTCCGGCCCTGCAGGCGCTTCGACATACGGGGCATTATCTACACGAGCACTGTTCCCCACTTTATCCAACAT
Protein sequence:
MLDKVGNSARVDNAPYVEAPAGPEPMRLDAARGQKPKAPMDAPSSLRLRAIAGGMPSEEAGTTAPADVNQPTPADVRPEMGVGPVRLFVKLMVGTLALSTGVRFARYPGDFAKDPGGSVWAAINLQHRSSVTHLEQGNQTVLERFGAHIPKDSACFKARADVTHDVPSGVAGQWNHKTQRVKLNPNIHFESHPAQVAGHEFIHCYTHPEFVERHIKHPHWKALNEGLTTRLTEKLPDPKRLLPIPLAKDPYHGFKLSTGDSWPDAARRIEDEVGEDVLLKAFFGGDDQAISEVAKAAAQIYPKIASRITERELYQAGSMRGGQQLAECYVGALLKNGQKLPDSFTNYLLPVFSYSDISPGHAKKIQAQAEKSQKRMGIVFDTAFFSPDLKTQRLALGMLREDLLMHWKKVIPDRK
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
26335.1 | 415 | 9.02 | -0.444 | 36.5 |
Plant infestation information
Experimental plant: | |
Susceptible plant: | Disease name: |
Host classification: | NCBI Species: |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro:
Pfam:
SMART:
KEGG:
PRINTS: