Effector profile
PlantPEAD ID: PlantPEAD40098 | Uniprot ID: A0A3M4W345 | Source: Orthologous |
Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 36746 | Pathogen type: Bacteria |
Species: Pseudomonas cichorii | Strain: ICMP 6917 | Other name: |
Gene name: | NCBI Gene ID: RBRY01000066 | |
Entry name: A0A3M4W345_PSECI | Protein name: Ribosomal RNA small subunit methyltransferase E | |
DOI: |
Gene/Protein information
Gene sequence:
TTAGAAATCCCCCCACAGTTGCTGAGCCACACTCAGCGCAACCACCGGCGCTGTTTCGGTGCGCAGCACGCGCGGGCCCAGGCGGGCGGCGTGGAAGCCTGATGCTTTGGCTTGCTCGACTTCTGCATCGTTCAAACCGCCTTCAGGGCCGATCAGAAAGGCCAGGGTCGTCGGTTTTTCATGACTGGTCAGGGCTTCGGCGACCGGGTGCAGGACCAGCTTGAGGTCGGCCTCGGTCTGCTTGAGCCAGTCGGCCAGTGGCATCGGCGGATGAATCACCGGCACAACCGAACGGCCGCATTGCTCGCAGGCGCTGATTGCGATCTGTTGCCAGTGCGCCTGACGTTTTTCGGCGCGTTCGTCCTTCAGGCGGACTTCGCAGCGTTCACTGACGACAGGAGTGATTTCAGTGACGCCCAGTTCTGTGGCTTTCTGGATCGCCCAGTCCATCCGCTCGCCACGAGACAGGCCCTGGCCCAGATGAATGCGCAGCGGCGATTCGATCTGCCCGGCCAGGCTTTCAGTGAGCTGGACGCGCACGCGCTTCTTGCCGACTTCCACCAGCGTGCCGCGAAACTCCGTGCCCGAGCCGTCGAACAGTTGCAGCGTATCGCCCTCGGCCATGCGCAGGACGCGACTGATGTAGTGCGCCTGAGCCTCGGGCAATTCGTGTTCGCCCAGGCTCAGGGTGGCGTCGGTAAAGAAGCGGGACAGTCTCAT
Protein sequence:
MRLSRFFTDATLSLGEHELPEAQAHYISRVLRMAEGDTLQLFDGSGTEFRGTLVEVGKKRVRVQLTESLAGQIESPLRIHLGQGLSRGERMDWAIQKATELGVTEITPVVSERCEVRLKDERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWLKQTEADLKLVLHPVAEALTSHEKPTTLAFLIGPEGGLNDAEVEQAKASGFHAARLGPRVLRTETAPVVALSVAQQLWGDF
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
26924.9 | 239 | 5.93 | -0.225 | 44.76 |
Plant infestation information
Experimental plant: | |
Susceptible plant: | Disease name: |
Host classification: | NCBI Species: |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro: IPR029028,IPR015947,IPR006700,IPR046886,IPR046887,IPR029026
Pfam: PF04452,PF20260
SMART:
KEGG:
PRINTS: