Effector profile
PlantPEAD ID: PlantPEAD40103 | Uniprot ID: Q7D102 | Source: Orthologous |
Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 1176649 | Pathogen type: Bacteria |
Species: Agrobacterium fabrum | Strain: strain C58 / ATCC 33970 | Other name: Agrobacterium tumefaciens |
Gene name: | NCBI Gene ID: AE007869 | |
Entry name: Q7D102_AGRFC | Protein name: Ribosomal RNA small subunit methyltransferase E | |
DOI: |
Gene/Protein information
Gene sequence:
TCAGTTCCAGTCGCCGATAACAGCCTGAATGACGGCGAGTGCGGCGACGGCGGCCGTGTCGGCCCGCAATATGCGCGGCCCGAGCGGGATCGGGGTGACGAAGGCAAGGCTGCGCAGCAACGCCCGTTCCTCCTCGGAAAAACCGCCTTCCGGGCCGACCAGCAGCGCGATTTTGCGTTCCTTGACGGCCTGCAGGATCGGCAGCGGATTTTGGCCCGCATCGCCTTCGTCGCAATAGATGATGCGACGGTCTTCCGGCCAGGTCTCCAGCATCTCTTTCAGCTTCACCGGCTCTGCCACTTCGGGCAGGGACAGAATGCCGCATTGTTCGGCGGCCTCGATGGCATTGGCGCGCAGTTTTTCGCTATTGTGGATCTTGCCCTGAACATGCTGCGTCATCACCGGCTGCAACAGGCCAGCACCCATCTCCACCGCCTTCTGCACCAGATAATCCATGCGCCCGACTTTCAGCGGGGCGAAGAGATAATGCAGCTCCGCGGCATCCGGTTGCGGCCGCGTCTGTTCGAGCGGAACGAGGCTAATCTTCTTGCGGCTCGGAAAGGAGAGCTTCGCTTTCCATTCGCCGTCGCGGCCGTTGAACAGCAGGATTTCCGCGCCGTCGGTCATGCGCAGCACATTGGCGAGATAGTTGAACTGTTCGCCCGTCGCCTCCTGCGCCACACCCTCGGAAAGGGAGGCTTCGATGAACAGGCGTTGCAT
Protein sequence:
MQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVKERKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQAVIGDWN
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
26631.5 | 239 | 5.28 | -0.09 | 43.2 |
Plant infestation information
Experimental plant: | |
Susceptible plant: | Disease name: |
Host classification: | NCBI Species: |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro: IPR029028,IPR015947,IPR006700,IPR046886,IPR046887,IPR029026
Pfam: PF04452,PF20260
SMART:
KEGG: atu:Atu0657
PRINTS: