Effector profile
PlantPEAD ID: PlantPEAD40176 | Uniprot ID: A3F5B9 | Source: Orthologous |
Localization: Apoplastic(Pre) | Pathogen taxonomy ID: 97005 | Pathogen type: Nematoda |
Species: Heterodera schachtii | Strain: | Other name: Sugarbeet cyst nematode, Tylenchus schachtii |
Gene name: Pel2 | NCBI Gene ID: EF203898 | |
Entry name: A3F5B9_HETSC | Protein name: Probable pectate lyase F | |
DOI: |
Gene/Protein information
Gene sequence:
ATAAATTGCATAAAAATTAATTAATCAATGCATTCCTTTCTTGTTCTAACCGTTCTTTTTGCCAATTTGGCAGCAAATGCTTTTGGGCAACAATGGCCAAAAGCGACGAGTGAAGAAACTGTTAAGGCAACAATTAAAGTGTCGGGAGGCGTCAAAGACTTTGGCTTCAAACGGTTGACCGCCTCTTCGGCATTGGGCAGCGGTGATCAGTCGGAGGGCCAAAAAGCACTGATCCGTGCCGAAAAGAACGCAGTGATCAAAAATTTGATCATTGGCCAAAACGGGGCGGACGGCATTCACTGCTATGACGGGTGTACGCTTCAAAATGTGTGGTGGGAGAAGGTTGGCGAAGACGCGGCCACTTTCCGGAGCAGCAGCGGGTGCAAGGAGTACAGTTTCACGGTCACGGGCGGCGGTGTGAAAAATGCCAAGGACAAAGTGTTCCAAATGAACGGCGGTGGCACTTTGACGATCAAAAATTTTGTGGCGGAAGGCATTGGCAAATTGGCGCGCGCATGCGGCAACTGCAAAACGCAATGCCAAAAACGGAAGTTTGTGCTGGAGAACATTAAAGTGACTGGACTGAAAACGCTGTTGTGTGGCCTCAACGAGAATTATGGCGATGTGGCGACCATCAAAAATGTGCAAATCACCGGGTCAAAGAAAGTGTGTGCCGAATTCCAAGGCAACAACCAGCAAAAAGAGCCGCCAATGTTGCGCAGTTTCGACGTCGGATCGAAAGGCGATGGCAAAAATTGCATCATTTCGGGCACCACCAGCGGCTGATCAGAAGAGTGATCAAACAGTGTTAAAATGGGAAAGAAATTATTTGATCGAAGAATTAATATAAATAATGGAAATCGTTTAATTAATTAATAATGTTTTGATGTGTTGATGCAAAAGTTCGGAAATAAATTGATAATTGAGAAAAAAAAAAAAAAAA
Protein sequence:
MHSFLVLTVLFANLAANAFGQQWPKATSEETVKATIKVSGGVKDFGFKRLTASSALGSGDQSEGQKALIRAEKNAVIKNLIIGQNGADGIHCYDGCTLQNVWWEKVGEDAATFRSSSGCKEYSFTVTGGGVKNAKDKVFQMNGGGTLTIKNFVAEGIGKLARACGNCKTQCQKRKFVLENIKVTGLKTLLCGLNENYGDVATIKNVQITGSKKVCAEFQGNNQQKEPPMLRSFDVGSKGDGKNCIISGTTSG
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Main properties of effector
Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
---|---|---|---|---|
26819.6 | 252 | 9.24 | -0.263 | 24.85 |
Plant infestation information
Experimental plant: | |
Susceptible plant: | Disease name: |
Host classification: | NCBI Species: |
Pathogen-plant protein interaction
Uniprot ID | Protein name | Gene name | Species | Protein sequence |
---|
No Record found.
External Links
Interpro: IPR004898,IPR012334,IPR011050
Pfam: PF03211
SMART:
KEGG:
PRINTS: