Effector profile
| PlantPEAD ID: PlantPEAD40905 | Uniprot ID: A0A3M4VMR6 | Source: Orthologous |
| Localization: Cytoplasmic(Pre) | Pathogen taxonomy ID: 36746 | Pathogen type: Bacteria |
| Species: Pseudomonas cichorii | Strain: | Other name: |
| Gene name: | NCBI Gene ID: RBRY01000135 | |
| Entry name: A0A3M4VMR6_PSECI | Protein name: Type VI secretion protein IcmF | |
| DOI: | ||
Gene/Protein information
Gene sequence:
ATGAAAAACCTCTTGAAGAAACTGGCAGCCCTGTTGTGCAAGACATGGGTCTGGACGCTGCTGTCGGTATTGTTTGTGGTGCTGTGCATCTGGTTCACGGGACCGTTGCTGGCCGTGGCCGATCACAAGTTCTGGGAAAGTCCGACATCCCGGCTCTTGTCCGTAAGCCTGTTGTTTCTGCTGTGGGGGCTGGGCATGGTTTTCGTCAGTTGGCGCAGCGCAGCAGACAGGAAGCAGAAAGAAGCCGACACCACAGGTCAGGAACAGCTTCGTCAGCAGGCCCTGATTGAAAAGGAACACAAGGAATTATCCGGTCGCTTCAAGGACGCCCTGCGCGTCATCAGACTCTCCAGCCTGTATGGTGGTGAGGGTAAGCACTTGCCCTGGTACTTGTTGATCGGGCCGGCCGGGAGTGGCAAGACCAGCCTGCTGGACTTTTCCGGCCTGGACTTCCCGCTCAACAAGGTCGAGCGCAAGTTGACCCGCGATACTCGGGGTACTGCCGGCAGCGATTGGTACTTTGCCGATCAGGCGGTGATCATCGATACGCCGGGCCGTTATCTGGAGCAGCGTCAGCCACTGATCGATGCCAGTGCCTGGCTGATGCTTTTGGGGCTGCTGCGCAATCGTCGGCGTACCTGCCCTGTGAATGGGGTGCTGGTGACATTGCCCGTCGAGATCCTGTCCGGTAACGACGAAGTCCGTCTGGAAATGATGGCGGAAGCGGTGCGCAGCCGTCTGGATGAGTTGCACCGCCAGTTGCGTGTCGACGTGCCGGTGTATCTGGTGCTGACCAAGGCCGACTCGCTGACGGGGTTCGATGAGTTTTTCGACCCTCTGTCCAAGGAAGAGGGTGAGCAGGTGCTTGGCGCAACGTTCGGCCAGGATCAGCGGGGCAGTGACCCCGATGTGCTCAGACAGGAATTTGAAGCGCTGCTGCGACGTATTGGCAGCCAGGTCATCATGCGCATTCACCAGGAGTATGACCCGCAGCGTCGTGGGCGAATGCTTGGGTTTCCCGATCAGCTGGGTGGGATCGGGCATCGATTGTGTCTGTTTGCCGAGATGGCTTTTGCGGGCAGTCGCTATCAGCGTGCCACTCAGTTACGGGGATTTTATTTGACCCGTGCGCCTCACTTGCTCCCAAGCGTTCAAGAGAACGGTGCAGAGGAGGGTGAACATGCCCCGATCAACACCAGAGCATTGCCAGGCATGCACGCCGGGCGGCCACGCTTCATTCGTCAGCTCTTGAGTCGGGTGATCTTTCCCGAGGCGGCTCTGGCCATGATGGACAAGGGCGAGCGTCAGCGGATGAGCTGGATTCGACGCACAGCGTATTGTGCGGCCCTGATGGTCTTGGTGTTGTTCGGCGCGCTATGGGCGAACGGTTTCAGCGCCAATCATGATCGTCTGGAGCGTATTCGCCATCTGGCTCAGCAATGGACCCAGCAACGTTCGGGCATGAATGCCCAGACCGATACCCTGGCGATACTCAAGTCCCTGAACCTCAGTCATGAAGCCACCCGGGTCTTTCCTGGCAGGGAAGAGGTCGCGCTGCATGAGCGCAGCGGCCTTTATCAAGGCGTCACGAGCAATCAGGTGCTTTCGGGTGCCTATCAGGCTGAACTGCAAAGCCAGTTGTTACCCCGTGTAGCCCGCACACTGGAAGCACAGATACAGGCCAGCATGAAGGATCGTGAACAACTGCTGAGCAGCTTGCGGGCTTACTTGATGCTCTACTTGCCCGAGCGCCGCGACCAGGCCTGGCTGCAAGACTGGATGGCGGCTGACTGGACGCTGCGTTATGCAGGTCTGCCCAGGGAACAGAGCGAGCTAAATGGCCATCTGGAGCGCCTGCTTCGGCAACCGTTCAAGTACCCGATCAACGATGCATTGGTGGCACAGGCTCGTCAGGCGCTTCGCAGTGAATCCCTGGCCACTATCGTCTATCGGCTCCTGCGCGAGCAGGCACGCAGCCTTGCGGATTATCGCCTGGGTCATCATATCGGCACCCAGGCCAGTCTGTTGGTCGGTACGCAATACCCGATTCCCGGTTTCTATACCCGCCAAGGCTATCAACAGTTCTTTGTGACTCAGGGCGTTGGCGCGGTCAATGACATCCTGCGTGACAACTGGGTGCTGGGCGAGGGTTCAGGCCTGAGCGGCATGGAAATGCGCAGCCTGATGGTCGAGCTGGAGCAGCTGTATTTTCGTGATTACGCCAATCACTGGAGCGAAGCGGTCGCTCAGGTTGCATTGCAGCCCTTTGAAGGCCCCTTGCATGGGGCAGTTCAAGCAGCCGGCATGACAGCTGCCAATTCGCCGTTGGTGCAACTGCTGACGCAAGTACGCGATAACACGCTGTTTCCGACTATTGCCGAAAACCTGGAGCAGGTAGCTGAGGGCGCGCCTTCAGGTGTGCTGAATGCCGTGGCGTCTGCGGCAGCCGATCAGGCAGCGGCTCTGGCTCCCAAACTGCCGGATACGGCGAAGAAGTCATTGCAGCGCCGTTTCGAGCCCTTGCATCGTTTGCTGGATGAACACAACGGCCCTGCTGCAGAACTGCTGGCGGTCATGCAGGCCTTGAACGACGTGCAACAGCAACTGGCCAGCCTTGGGCGGTCCGGTCAGCCTGAGCTACTGGCTTTCGAGATGGCCAGAGTCCGCATGACGGGTCAGCGGGATGCGCTGAGCAACCTTCGCAATGCATCCGCCCGGTTGCCCCAACCTGTTGGCGGATGGTTCAACGGACTGGCCGAAGACACTTGGTCATGGGTTCTGGGTGAGGCCTATCAACACATCAACCAGCGTTACAGGAATGAGCTGTACAGCTTTTATGAACAGTCGCTCGATAAACGTTATCCGTTTCATGCCCATAGCAGCAGCGATGTGGCCATCAACGATTTTCGGGAGTTCTTCAAGGCTCAAGGCCTTGCCGAGCGCTTTTTCGACAGCTACATGAAGCCTTTTGTCAGCGGTGATCCGGGGCATTATCGCCTGCGCACCATTGATGGCTCAGGCTTGCCAGCCAGCCGTGCCTACCTCGACCAGATGGGGCGCGTGCACACCATTCGCAAAAGCTTCTTTGCAGAAAATCCCGAGGAGCCGCTGGTGCAGTTCAAGCTGGAACCCTACACGCTGGACCCGGCCGTGAGCCGTGCCGAGTTTCGTCTGGGCGATCAGATGATGGAGTATCGCCATGGTCCTGTTGTGCCGGTTTCGTTCAGATGGCCGACCGATGCGGATGACGGTCGCGCCAGTCTGGTGCTGGAGCGAATGGCAGAACGGCCCATCGGTATCGAGAAAACTACCGGGCCATGGTCACTGTTCCGCCTGCTGGATTTGATGCAGACCGAATCCCTCCAGGGCCGGGATGTGCTGGTGCTCAAGGCCGATGTAGGAGGGCTGAGGGCCAATTACCTGTTGCTCGCCCAGCGAGCGGCCAACCCCTTCGATGTTGCGGTATTGCGCAGATTCCGGATGCCGGCACAGCTTTGA
Protein sequence:
MKNLLKKLAALLCKTWVWTLLSVLFVVLCIWFTGPLLAVADHKFWESPTSRLLSVSLLFLLWGLGMVFVSWRSAADRKQKEADTTGQEQLRQQALIEKEHKELSGRFKDALRVIRLSSLYGGEGKHLPWYLLIGPAGSGKTSLLDFSGLDFPLNKVERKLTRDTRGTAGSDWYFADQAVIIDTPGRYLEQRQPLIDASAWLMLLGLLRNRRRTCPVNGVLVTLPVEILSGNDEVRLEMMAEAVRSRLDELHRQLRVDVPVYLVLTKADSLTGFDEFFDPLSKEEGEQVLGATFGQDQRGSDPDVLRQEFEALLRRIGSQVIMRIHQEYDPQRRGRMLGFPDQLGGIGHRLCLFAEMAFAGSRYQRATQLRGFYLTRAPHLLPSVQENGAEEGEHAPINTRALPGMHAGRPRFIRQLLSRVIFPEAALAMMDKGERQRMSWIRRTAYCAALMVLVLFGALWANGFSANHDRLERIRHLAQQWTQQRSGMNAQTDTLAILKSLNLSHEATRVFPGREEVALHERSGLYQGVTSNQVLSGAYQAELQSQLLPRVARTLEAQIQASMKDREQLLSSLRAYLMLYLPERRDQAWLQDWMAADWTLRYAGLPREQSELNGHLERLLRQPFKYPINDALVAQARQALRSESLATIVYRLLREQARSLADYRLGHHIGTQASLLVGTQYPIPGFYTRQGYQQFFVTQGVGAVNDILRDNWVLGEGSGLSGMEMRSLMVELEQLYFRDYANHWSEAVAQVALQPFEGPLHGAVQAAGMTAANSPLVQLLTQVRDNTLFPTIAENLEQVAEGAPSGVLNAVASAAADQAAALAPKLPDTAKKSLQRRFEPLHRLLDEHNGPAAELLAVMQALNDVQQQLASLGRSGQPELLAFEMARVRMTGQRDALSNLRNASARLPQPVGGWFNGLAEDTWSWVLGEAYQHINQRYRNELYSFYEQSLDKRYPFHAHSSSDVAINDFREFFKAQGLAERFFDSYMKPFVSGDPGHYRLRTIDGSGLPASRAYLDQMGRVHTIRKSFFAENPEEPLVQFKLEPYTLDPAVSRAEFRLGDQMMEYRHGPVVPVSFRWPTDADDGRASLVLERMAERPIGIEKTTGPWSLFRLLDLMQTESLQGRDVLVLKADVGGLRANYLLLAQRAANPFDVAVLRRFRMPAQL
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Main properties of effector
| Molecular weight | Sequence length | Theoretical pI | GRAVY | Instability index |
|---|---|---|---|---|
| 131557 | 1165 | 8.63 | -0.265 | 40.72 |
Plant infestation information
| Experimental plant: | |
| Susceptible plant: | Disease name: |
| Host classification: | NCBI Species: |
Pathogen-plant protein interaction
| Uniprot ID | Protein name | Gene name | Species | Protein sequence |
|---|
No Record found.
External Links
Interpro: IPR009612,IPR010623,IPR027417,IPR017731,IPR048677,IPR025743
Pfam: PF06761,PF14331,PF06744,PF21070
SMART:
KEGG:
PRINTS: