Database Link
JGI - DOE Joint Genome Institute https://jgi.doe.gov/
Phytozome - A tool for green plant comparative genomics https://phytozome.jgi.doe.gov/
PlantGDB - Tools and resources for plant genomics http://www.plantgdb.org/
MSU - Rice Genome Annotation Project http://rice.plantbiology.msu.edu/
ThaleMine - Data mining on Arabidopsis thaliana Col-0 for the ARAPORT project https://apps.araport.org/thalemine/
TAIR - The Arabidopsis Information Resource https://www.arabidopsis.org/
ASRG - Arabidopsis Splicing Related Genes http://www.plantgdb.org/SRGD/ASRG/
SRGD – Splicing Related Gene Databse http://www.plantgdb.org/SRGD/index.php
NCBI – National Center for Biotechnology Information https://www.ncbi.nlm.nih.gov/
UCSC Genome Browser – A collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data http://genome.ucsc.edu/
InterPro – Protein sequence analysis & classification http://www.ebi.ac.uk/interpro/
PDB – RCSB Protein Data bank http://www.rcsb.org/pdb/
Swiss–Prot - A comprehensive, high-quality and freely accessible resource of protein sequence and functional information http://www.uniprot.org/
TrEMBL - A comprehensive, high-quality and freely accessible resource of protein sequence and functional information http://www.uniprot.org/
STRING – Functional protein association networks https://string-db.org/
RefSeq – A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein http://www.ncbi.nlm.nih.gov/RefSeq/
BAR eFP – A web browser for gene expression map of Arabidopsis development http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi
GenBank - NIH genetic sequence database, an annotated collection of all publicly available DNA sequences https://www.ncbi.nlm.nih.gov/genbank/
Gramene - A resource for comparative genome analysis in the grasses http://gramene.org/
IRRI – International Rice Information System http://irri.org/
Ensembl Plants - A resource for plant comparative genomics http://plants.ensembl.org/
Pfam - Protein families database http://pfam.xfam.org/
SUPERFAMILY - A database of structural and functional annotation for all proteins and genomes http://supfam.org/SUPERFAMILY/
SMART – Simple Modular Architecture Research Tool http://smart.embl-heidelberg.de/
PANTHER - GENE FAMILIES, PHYLOGENETIC TREES, HMMS http://www.pantherdb.org/panther/
CDD - Conserved Domain Database https://www.ncbi.nlm.nih.gov/cdd/
Gene3D – Domain families assignments http://gene3d.biochem.ucl.ac.uk/
PROSITE - Database of protein domains, families and functional sites https://prosite.expasy.org/
PRINTS - A resource for identification of protein families http://130.88.97.239/PRINTS/index.php
Wikigenes – Wikigenes – Collaborative Publishing https://www.wikigenes.org/
iHOP – Information Hyperlinked over Proteins http://www.ihop-net.org/UniPub/iHOP/