Phoma stem canker

Phoma stem canker (blackleg) caused by Leptosphaeria maculans attacks many brassica crops (especially rape) and can spread rapidly within a field. Plants can become infected at the seedling stage or at any stage in the field. Symptoms of the blackleg start as slight lesions on stems at cotyledon scars which elongate, turn brown with a black to purplish border, and become sunken. The lesion extends up and down the stem, and the stem becomes girdled and blackened, with many fruiting bodies (pycnidia) embedded in the tissue. Lesions may extend below the soil and attack roots. Diseased plants often wilt, lodge, and die. On root crops, symptoms occur in the form of cankers on the fleshy roots and a dry rot may appear in storage.

List of experimentally identified pathogen effectors

PlantPEAD ID Uniprot ID Localization Gene name Pathogen type Infested plant Species
Q258K5
Apoplastic(Exp)
AvrLm1
Fungi
Brassica napus
Leptosphaeria maculans
A4F4L2
Apoplastic(Exp)
AvrLm6
Fungi
Brassica napus
Leptosphaeria maculans
B9ZUL0
Cytoplasmic(Exp)
AvrLm4-7
Fungi
Brassica napus
Leptosphaeria maculans
E4ZT84
Apoplastic(Exp)
AvrLm11
Fungi
Brassica napus
Leptosphaeria maculans
A0A0A0S3X0
Apoplastic(Exp)
AvrLm2
Fungi
Brassica napus
Leptosphaeria maculans
V5TFR9
Apoplastic(Pre)
AvrLmJ1
Fungi
Brassica napus
Leptosphaeria maculans
A0A0U2R974
Apoplastic(Pre)
AvrLm3
Fungi
Brassica napus
Leptosphaeria maculans
A0A8K1BLB1
Apoplastic(Exp)
AvrLm11
Fungi
Brassica napus
Leptosphaeria maculans
E5AEP6
Apoplastic(Pre)
Avrlm14
Fungi
Brassica oleracea
Leptosphaeria maculans
A0A482ATC4
Cytoplasmic(Exp)
AvrLm10
Fungi
Brassica napus
Leptosphaeria maculans
NONE
Unknown
AvrLmS-Lep2
Fungi
Brassica napus
Leptosphaeria maculans
Showing 1 to 11 of 11

List of orthologous identified pathogen effectors

PlantPEAD ID Uniprot ID Localization Pathogen type Species Query proteins
A0A8S9CR39
Cytoplasmic(Pre)
Fungi
Colletotrichum fructicola
A4F4L2
A0A8H3WR39
Cytoplasmic(Pre)
Fungi
Colletotrichum asianum
A4F4L2
A0A8H4CT25
Cytoplasmic(Pre)
Fungi
Colletotrichum gloeosporioides
A4F4L2
A0A8H4FPH8
Apoplastic(Pre)
Fungi
Colletotrichum gloeosporioides
A4F4L2
A0A9P5EPK2
Cytoplasmic(Pre)
Fungi
Colletotrichum siamense
A4F4L2
T0L3S6
Cytoplasmic(Pre)
Fungi
Colletotrichum gloeosporioides
A4F4L2
A0A135UV23
Apoplastic(Pre)
Fungi
Colletotrichum salicis
A4F4L2
A0A6S6VSP0
Apoplastic(Pre)
Fungi
Pyrenophora teres
Q258K5
A0A6S6W9K0
Apoplastic(Pre)
Fungi
Pyrenophora teres
Q258K5
E3RD21
Apoplastic(Pre)
Fungi
Pyrenophora teres
Q258K5
E3RZF9
Apoplastic(Pre)
Fungi
Pyrenophora teres
Q258K5
A0A5M9LM32
Cytoplasmic(Pre)
Fungi
Pyrenophora tritici-repentis
Q258K5
B2VY30
Cytoplasmic(Pre)
Fungi
Pyrenophora tritici-repentis
Q258K5
A0A4Q2V3J4
Cytoplasmic(Pre)
Fungi
Fusarium oxysporum
Q258K5
A0A8H4ULD6
Cytoplasmic(Pre)
Fungi
Fusarium zealandicum
Q258K5
A0A8H4YP56
Apoplastic(Pre)
Fungi
Fusarium anthophilum
Q258K5
A0A8H5KDK2
Apoplastic(Pre)
Fungi
Fusarium pseudocircinatum
Q258K5
A0A8H5MQ42
Apoplastic(Pre)
Fungi
Fusarium mexicanum
Q258K5
A0A8H5RGJ9
Apoplastic(Pre)
Fungi
Fusarium
Q258K5
A0A8H5T3T3
Cytoplasmic(Pre)
Fungi
Fusarium circinatum
Q258K5
Showing 1 to 20 of 59