Root and stem rot of soybean

Phytophthora root and stem rot is a significant disease in many areas where soybeans are grown. In the early season, seedlings may be attacked and killed in the ground or soon after emergence. At seedling and later vegetative stages, infected stems appear bruised and soft, secondary roots are rotted, the leaves turn yellow, and brown and plants can wilt and die. It is important to recognize that Pythium is a related pathogen that causes similar damage and symptoms in seeds and seedlings. In the mid or late season, plants may die throughout the season. On infected plants, brown lesions form on the roots, the roots rot and degrade, and a dark chocolate-brown discoloration of the stem often extends from below the soil line upward into the lower parts of the plant. Leaves turn yellow, wilt, and typically stay attached after plant death. Plants are often killed in patches or in sections of rows.

List of experimentally identified pathogen effectors

PlantPEAD ID Uniprot ID Localization Gene name Pathogen type Infested plant Species
Q9AXL8
Apoplastic(Exp)
PsojNIP(NIP1)
Oomycota
Glycine max
Phytophthora sojae
Q6TA23
Cytoplasmic(Exp)
Avr1b-1
Oomycota
Glycine max
Phytophthora sojae
G4ZRQ7
Cytoplasmic(Exp)
PsAvh331
Oomycota
Glycine max
Phytophthora sojae
G4ZRQ8
Cytoplasmic(Exp)
Avr1b
Oomycota
Glycine max
Phytophthora sojae
G5ADB3
Cytoplasmic(Exp)
PSR2
Oomycota
Glycine max
Phytophthora sojae
B2C6F3
Cytoplasmic(Pre)
PsAvh163
Oomycota
Glycine max
Phytophthora sojae
G5A0G9
Apoplastic(Exp)
XEG1
Oomycota
Glycine max
Phytophthora sojae
A5YTY8
Cytoplasmic(Exp)
Avr3a
Oomycota
Glycine max
Phytophthora sojae
A7L812
Cytoplasmic(Exp)
PsAvr4_6
Oomycota
Glycine max
Phytophthora sojae
A4LAA7
Cytoplasmic(Exp)
Avr1c
Oomycota
Glycine max
Phytophthora sojae
A4L9T6
Cytoplasmic(Exp)
Avr1a
Oomycota
Glycine max
Phytophthora sojae
C0LF23
Cytoplasmic(Exp)
Avr3c
Oomycota
Glycine max
Phytophthora sojae
A0A0M5K865
Cytoplasmic(Exp)
PsCRN108
Oomycota
Glycine max
Phytophthora sojae
G4ZHR2
Apoplastic(Exp)
PsXEG1
Oomycota
Glycine max
Phytophthora sojae
E0W544
Cytoplasmic(Exp)
PsAvh23
Oomycota
Glycine max
Phytophthora sojae
E0W5A0
Cytoplasmic(Exp)
PsAvh73
Oomycota
Glycine max
Phytophthora sojae
E0W4Q8
Apoplastic(Exp)
PsAvh181
Oomycota
Glycine max
Phytophthora sojae
Q945U0
Apoplastic(Exp)
GIP1
Oomycota
Glycine max
Phytophthora sojae
Q945T9
Apoplastic(Exp)
GIP2
Oomycota
Glycine max
Phytophthora sojae
G4ZLE6
Cytoplasmic(Exp)
Avr1d
Oomycota
Glycine max
Phytophthora sojae
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List of orthologous identified pathogen effectors

PlantPEAD ID Uniprot ID Localization Pathogen type Species Query proteins
K3X352
Cytoplasmic(Pre)
Oomycota
Globisporangium ultimum
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
K3X5M7
Cytoplasmic(Pre)
Oomycota
Globisporangium ultimum
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
K3XCP7
Cytoplasmic(Pre)
Oomycota
Globisporangium ultimum
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A421F2D5
Cytoplasmic(Pre)
Oomycota
Phytophthora kernoviae
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A662X0F5
Cytoplasmic(Pre)
Oomycota
Nothophytophthora
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A662XIY8
Apoplastic(Pre)
Oomycota
Nothophytophthora
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0W9X1
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0WY91
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0X7B0
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0XCK1
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0XCX3
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A6G0XDI9
Cytoplasmic(Pre)
Oomycota
Aphanomyces euteiches
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A833RY69
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A833SJK7
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
A0A833WEX9
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
Q2M402
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
Q2M403
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
Q2M406
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
Q2M410
Cytoplasmic(Pre)
Oomycota
Phytophthora infestans
Q8H6Z4,P0CV73,G4YRT1,E9M7A1,G4YUT3
K2QPU6
Apoplastic(Pre)
Fungi
Macrophomina phaseolina
Q9AXL8,Q9SPD4,Q9AT28,L7NCS1,A0A2R2Z552,A0A2R2Z560,A0A2R2Z570,A0A2R2Z561,A0A2R2Z564,A0A2R2Z575,A0A2R2Z574,L7NCR0,A0A2R2Z572,L7NCQ4,L7NCR8,L7NCR1
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